RNA id: TU494295


Basic Information

Item Value
RNA id TU494295
length 218
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G430492
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1384634 ~ 1384851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAGTATTTGTTTGAGAGCTGTTTGCTCAGGTGAATCAAATCATCACTGAACAAGATCCAGATATTTGTGTCTCATTTCTGGTTTGTGGTTGTGAGTGGGTGCAGGTGAGATTGCAACTACATCGCTTCACGTTCCACTAATCATTGACTGTGTAAACTCATAAAATCGGCATTATTTCGACATATTTCGGCGTGAAACGGCTTTGCTAACAAGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494292 lncRNA upstream 60206 1323063 ~ 1324428 (+) True G430489
TU493950 lncRNA upstream 94724 1288725 ~ 1289910 (+) True G430182
TU493910 lncRNA upstream 97873 1284690 ~ 1286761 (+) True G430142
TU493881 lncRNA upstream 114519 1236345 ~ 1270115 (+) True G430113
TU494280 lncRNA upstream 190674 1193748 ~ 1193960 (+) True G430478
TU494301 lncRNA downstream 10901 1395752 ~ 1395970 (+) True G430497
TU494302 lncRNA downstream 12062 1396913 ~ 1397177 (+) True G430498
TU494303 lncRNA downstream 14767 1399618 ~ 1399833 (+) True G430499
TU494306 lncRNA downstream 22179 1407030 ~ 1407249 (+) True G430502
TU494308 lncRNA downstream 23479 1408330 ~ 1408560 (+) True G430504
CI01000306_01329678_01378388.mRNA mRNA upstream 6124 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 62340 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01308428_01312462.mRNA mRNA upstream 71764 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01293889_01308316.mRNA mRNA upstream 76318 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01278230_01279369.mRNA mRNA upstream 105150 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01387861_01391135.mRNA mRNA downstream 2751 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01429843_01430151.mRNA mRNA downstream 43962 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01481595_01481955.mRNA mRNA downstream 96744 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01578460_01578838.mRNA mRNA downstream 193609 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 242618 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
TU493892 other upstream 166077 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 233696 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 384732 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1147265 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 763531 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1588305 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2389293 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2389332 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2393201 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile