RNA id: TU495903


Basic Information

Item Value
RNA id TU495903
length 261
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G431878
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1384867 ~ 1385127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGCTGCGTGTAAAAGTTATGCCGTCTTTAAAACGCGACGCTCATGTGCGAGGCGCTGCAAAAGATGCCAGACGCATGCGTAATGATCATACACGTCCGTCTAGTGCATGTTTACATAGATAGATGTTTACATAACTTCCCCTCCCTCTTGCAGCAACATCTCTTCTCTGATGACGAGGGCGGGGCAACCTGTCACTCACATGAGATCCACCAATAGCAAACCACAAACATCCAATCAATTCCCAACGGACAGAATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495902 lncRNA downstream 4740 1379875 ~ 1380127 (-) True G431877
TU495877 lncRNA downstream 60109 1324553 ~ 1324758 (-) True G431858
TU495876 lncRNA downstream 60326 1324341 ~ 1324541 (-) True G431857
TU495874 lncRNA downstream 61481 1323174 ~ 1323386 (-) True G431855
TU495822 lncRNA downstream 72433 1311702 ~ 1312434 (-) True G431814
TU495905 lncRNA upstream 21284 1406411 ~ 1406635 (-) True G431880
TU495906 lncRNA upstream 30106 1415233 ~ 1415655 (-) True G431881
TU495907 lncRNA upstream 31911 1417038 ~ 1417339 (-) True G431882
TU495911 lncRNA upstream 39915 1425042 ~ 1425246 (-) True G431886
TU495769 lncRNA upstream 42871 1427998 ~ 1428295 (-) True G431769
CI01000306_01284891_01287606.mRNA mRNA downstream 97237 1284823 ~ 1287630 (-) False CI01000306_01284891_01287606
CI01000306_01201604_01202608.mRNA mRNA downstream 180794 1200682 ~ 1204073 (-) True CI01000306_01201604_01202608
CI01000306_01120958_01127237.mRNA mRNA downstream 257307 1120816 ~ 1127560 (-) True CI01000306_01120958_01127237
CI01000306_01109880_01112379.mRNA mRNA downstream 272064 1109779 ~ 1112803 (-) True CI01000306_01109880_01112379
CI01000306_01086915_01093095.mRNA mRNA downstream 291766 1086768 ~ 1093101 (-) True CI01000306_01086915_01093095
CI01000306_01439864_01463150.mRNA mRNA upstream 54659 1439786 ~ 1463150 (-) True CI01000306_01439864_01463150
CI01000306_01469486_01475137.mRNA mRNA upstream 83661 1468788 ~ 1475137 (-) True CI01000306_01469486_01475137
CI01000306_01476783_01478195.mRNA mRNA upstream 91537 1476664 ~ 1478195 (-) True CI01000306_01476783_01478195
CI01000306_01483485_01492511.mRNA mRNA upstream 97745 1482872 ~ 1492511 (-) True CI01000306_01483485_01492511
CI01000306_01502721_01504240.mRNA mRNA upstream 117539 1502666 ~ 1504240 (-) True CI01000306_01502721_01504240
TU495821 other downstream 72433 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 221529 1163027 ~ 1163338 (-) True G431706
TU495333 other downstream 901218 448704 ~ 483649 (-) False G431428
TU495726 other upstream 332806 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 332806 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1615109 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 3157596 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3976516 5361643 ~ 5383763 (-) True G433450

Expression Profile