RNA id: TU494302


Basic Information

Item Value
RNA id TU494302
length 265
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G430498
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1396913 ~ 1397177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAACTCAAAATACGCCACTTCCATACCTAAAATACATATTTTACAGTTACTGTATGCGTTCCACACAATTCAACTTGAAAATCACTATATATGCTATTCTACAGGACTGGTTCAAAGTCAGAGTTGGAAACGTCTTGAAAAAAAATGTTTTTTTCCACAAATTTTGTATGTGTGCAAATTGTATAATATCCAAGGTACACATTTCTAGTAATTGTGCAGTTAATTTTCATATTGTATTTTCAGAAAGTTTTGGAATATTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494301 lncRNA upstream 943 1395752 ~ 1395970 (+) True G430497
TU494295 lncRNA upstream 12062 1384634 ~ 1384851 (+) True G430492
TU494292 lncRNA upstream 72485 1323063 ~ 1324428 (+) True G430489
TU493950 lncRNA upstream 107003 1288725 ~ 1289910 (+) True G430182
TU493910 lncRNA upstream 110152 1284690 ~ 1286761 (+) True G430142
TU494303 lncRNA downstream 2441 1399618 ~ 1399833 (+) True G430499
TU494306 lncRNA downstream 9853 1407030 ~ 1407249 (+) True G430502
TU494308 lncRNA downstream 11153 1408330 ~ 1408560 (+) True G430504
TU494313 lncRNA downstream 18030 1415207 ~ 1415606 (+) True G430509
TU494320 lncRNA downstream 30602 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
CI01000306_01387861_01391135.mRNA mRNA upstream 4592 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 18403 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 74619 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01308428_01312462.mRNA mRNA upstream 84043 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01293889_01308316.mRNA mRNA upstream 88597 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01429843_01430151.mRNA mRNA downstream 31636 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01481595_01481955.mRNA mRNA downstream 84418 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01578460_01578838.mRNA mRNA downstream 181283 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 230292 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 241888 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
TU493892 other upstream 178356 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 245975 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 397011 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1159544 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 751205 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1575979 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2376967 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2377006 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2380875 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile