RNA id: TU494308


Basic Information

Item Value
RNA id TU494308
length 231
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G430504
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1408330 ~ 1408560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACTTTGAGTAAAAACACACAGATTGAGTTTATCAGCATAGAAACAACGTCATGTTTATAACTCATTTCTAGCAGATAAGTGATCACTGGATTCAGGTAAATCAGGTATCTATGAGCAGAACTGTATATTGAGGGCAAAAAATAATTTTTTTGCATGGGATTTTTTTTTTTTTTTTTTAAATTTTACTTGCTCCCAAAAGTTAGTTACCTACTCAAAAATGAGTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494306 lncRNA upstream 1081 1407030 ~ 1407249 (+) True G430502
TU494303 lncRNA upstream 8497 1399618 ~ 1399833 (+) True G430499
TU494302 lncRNA upstream 11153 1396913 ~ 1397177 (+) True G430498
TU494301 lncRNA upstream 12360 1395752 ~ 1395970 (+) True G430497
TU494295 lncRNA upstream 23479 1384634 ~ 1384851 (+) True G430492
TU494313 lncRNA downstream 6647 1415207 ~ 1415606 (+) True G430509
TU494320 lncRNA downstream 19219 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
TU494321 lncRNA downstream 21214 1429774 ~ 1430016 (+) True CI01000306_01429843_01430151
TU494322 lncRNA downstream 22529 1431089 ~ 1431487 (+) True G430515
TU493929 lncRNA downstream 28535 1437095 ~ 1439973 (+) True G430161
CI01000306_01387861_01391135.mRNA mRNA upstream 16009 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 29820 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 86036 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01308428_01312462.mRNA mRNA upstream 95460 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01293889_01308316.mRNA mRNA upstream 100014 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01429843_01430151.mRNA mRNA downstream 20253 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01481595_01481955.mRNA mRNA downstream 73035 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01578460_01578838.mRNA mRNA downstream 169900 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 218909 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 230505 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
TU493892 other upstream 189773 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 257392 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 408428 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1170961 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 739822 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1564596 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2365584 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2365623 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2369492 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile