RNA id: TU494313



Basic Information


Item Value
RNA id TU494313
length 400
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G430509
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1415207 ~ 1415606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTCCTCAACAACCGTCCATACCGTCGTGATGAATACGATCCTCAATTGGATGGAACTGGAATAAATACTTTGAATGTTGCGATCCTGTCGGACTTATGATAGCTACCTGAATCGTAACAAAGCACTGTTGGCCAGAGGAGAACTGGCCCCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTAAACACCTATTTGCCACTTGTCTGCCACCTGATGGAGTTTGGGTTCCTTGCCGCTGTCGCCTTTGGCTTGCTTAGTTGGGGACACTTGACATTTGACTTGACATTTGATATTCAACAGTGCTTTGATCTGCCTGCATTGACACTATTCTTTAAGAGCTGCTGTGCAGCCAAATAATGTACCAGTTATCAATGTAAAGCTGCTTTGAC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494308 lncRNA upstream 6647 1408330 ~ 1408560 (+) True G430504
TU494306 lncRNA upstream 7958 1407030 ~ 1407249 (+) True G430502
TU494303 lncRNA upstream 15374 1399618 ~ 1399833 (+) True G430499
TU494302 lncRNA upstream 18030 1396913 ~ 1397177 (+) True G430498
TU494301 lncRNA upstream 19237 1395752 ~ 1395970 (+) True G430497
TU494320 lncRNA downstream 12173 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
TU494321 lncRNA downstream 14168 1429774 ~ 1430016 (+) True CI01000306_01429843_01430151
TU494322 lncRNA downstream 15483 1431089 ~ 1431487 (+) True G430515
TU493929 lncRNA downstream 21489 1437095 ~ 1439973 (+) True G430161
TU494343 lncRNA downstream 87783 1503389 ~ 1503601 (+) True G430533
CI01000306_01387861_01391135.mRNA mRNA upstream 22886 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 36697 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 92913 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01308428_01312462.mRNA mRNA upstream 102337 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01293889_01308316.mRNA mRNA upstream 106891 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01429843_01430151.mRNA mRNA downstream 13207 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01481595_01481955.mRNA mRNA downstream 65989 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01578460_01578838.mRNA mRNA downstream 162854 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 211863 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 223459 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
TU493892 other upstream 196650 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 264269 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 415305 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1177838 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 732776 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1557550 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2358538 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2358577 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2362446 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile