RNA id: TU495760


Basic Information

Item Value
RNA id TU495760
length 765
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G431760
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1430802 ~ 1431566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGGCGATTCAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATTAATGAAGGTCTTATGGGTATGGAACGACATGAGGGTGAGTAATAAATGACAATTTTCATTTTTGGGTGGACTAACCCTTTAACAATACCATGTATAACACTTGCTGAATGAGTACAGCAATATAATGCATTTAACATACTTCCTCTCAAACCAAGCCGCATGCAACACTTGTCACCATGATGGTAACTCTCCAAACACTCACATTAACAAACTCTTCTAAATTAGCATAAAACATTAATCACTACTAAATCTCCCATTTAACATTAATCTTGCACCAAAAACATTATATATCACTTAATTTTAGAATTTACTCTCGCTTTCAAGTGCCATGGGCATTCTGGGAAATAGAAATCCCAGCCCAGTTTCAGTTAAACTTAAGTTCGTCTAAATTAAAAGAAGTAAGTTAATAAAACTCAAAACAATGAAACAGTTCAGTTTACTTAAAATATATCAGTTCTGTGAACTTGAAAGTAAAAGAAAGTGCTAAATACTCAAAGTTGATTTGACTGAACTAATTTGTTTAATTTAAGTTTGTCCTACTCAAACCAATTATTTTGAGCGTTCGGGTTTACAGTGTTTAGAATAATTGGAATTACAAAAAATCCATTCATGAACAATGTGTTTTTATTTATTTATTTATTACAGTAGGGAGAATGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495774 lncRNA downstream 696 1429374 ~ 1430106 (-) True G431774
TU495769 lncRNA downstream 2507 1427998 ~ 1428295 (-) True G431769
TU495911 lncRNA downstream 5556 1425042 ~ 1425246 (-) True G431886
TU495907 lncRNA downstream 13463 1417038 ~ 1417339 (-) True G431882
TU495906 lncRNA downstream 15147 1415233 ~ 1415655 (-) True G431881
TU495915 lncRNA upstream 71823 1503389 ~ 1503680 (-) True G431890
TU495764 lncRNA upstream 77020 1508586 ~ 1512270 (-) True G431764
TU495732 lncRNA upstream 193779 1625345 ~ 1626017 (-) True G431732
TU495737 lncRNA upstream 273783 1705349 ~ 1706071 (-) True G431737
TU495746 lncRNA upstream 295923 1727489 ~ 1732425 (-) True G431746
CI01000306_01284891_01287606.mRNA mRNA downstream 143172 1284823 ~ 1287630 (-) False CI01000306_01284891_01287606
CI01000306_01201604_01202608.mRNA mRNA downstream 226729 1200682 ~ 1204073 (-) True CI01000306_01201604_01202608
CI01000306_01120958_01127237.mRNA mRNA downstream 303242 1120816 ~ 1127560 (-) True CI01000306_01120958_01127237
CI01000306_01109880_01112379.mRNA mRNA downstream 317999 1109779 ~ 1112803 (-) True CI01000306_01109880_01112379
CI01000306_01086915_01093095.mRNA mRNA downstream 337701 1086768 ~ 1093101 (-) True CI01000306_01086915_01093095
CI01000306_01439864_01463150.mRNA mRNA upstream 8220 1439786 ~ 1463150 (-) True CI01000306_01439864_01463150
CI01000306_01469486_01475137.mRNA mRNA upstream 37222 1468788 ~ 1475137 (-) True CI01000306_01469486_01475137
CI01000306_01476783_01478195.mRNA mRNA upstream 45098 1476664 ~ 1478195 (-) True CI01000306_01476783_01478195
CI01000306_01483485_01492511.mRNA mRNA upstream 51306 1482872 ~ 1492511 (-) True CI01000306_01483485_01492511
CI01000306_01502721_01504240.mRNA mRNA upstream 71100 1502666 ~ 1504240 (-) True CI01000306_01502721_01504240
TU495821 other downstream 118368 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 267464 1163027 ~ 1163338 (-) True G431706
TU495333 other downstream 947153 448704 ~ 483649 (-) False G431428
TU495726 other upstream 286367 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 286367 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1568670 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 3111157 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3930077 5361643 ~ 5383763 (-) True G433450

Expression Profile