RNA id: TU494343


Basic Information

Item Value
RNA id TU494343
length 213
lncRNA type intronic
GC content 0.46
exon number 1
gene id G430533
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1503389 ~ 1503601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCACGATCACCGTCTGTTCCTGTCAGTTCCTGGACTCCATTTCCCATAATCCTCCCTGCCAATCACATGCACACTCCACACCAATCACCAATTGCCACACACACCTGTAGATCATTACCTGGACTATAAAAGACTCACACACACACCACCTCATTGCGAAGTCTTGTTTCACCTAGTGTACATTTCTGAGCGTTATTATCCTGTCTACCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493929 lncRNA upstream 63416 1437095 ~ 1439973 (+) True G430161
TU494322 lncRNA upstream 71902 1431089 ~ 1431487 (+) True G430515
TU494321 lncRNA upstream 73373 1429774 ~ 1430016 (+) True CI01000306_01429843_01430151
TU494320 lncRNA upstream 74519 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
TU494313 lncRNA upstream 87783 1415207 ~ 1415606 (+) True G430509
TU494344 lncRNA downstream 3028 1506629 ~ 1506862 (+) True G430534
TU493901 lncRNA downstream 25551 1529152 ~ 1531757 (+) True G430133
TU494360 lncRNA downstream 89552 1593153 ~ 1593740 (+) False G430549
TU494361 lncRNA downstream 89552 1593153 ~ 1593740 (+) True G430549
TU494366 lncRNA downstream 113473 1617074 ~ 1617414 (+) True G430554
CI01000306_01481595_01481955.mRNA mRNA upstream 20893 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01429843_01430151.mRNA mRNA upstream 73114 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01387861_01391135.mRNA mRNA upstream 111068 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 124879 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 181095 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01578460_01578838.mRNA mRNA downstream 74859 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 123868 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 135464 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01679537_01704400.mRNA mRNA downstream 175936 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01811531_01821737.mRNA mRNA downstream 307930 1811531 ~ 1821864 (+) True CI01000306_01811531_01821737
TU493892 other upstream 284832 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 352451 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 503487 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1266020 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 644781 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1469555 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2270543 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2270582 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2274451 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile