RNA id: TU494344


Basic Information

Item Value
RNA id TU494344
length 234
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G430534
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1506629 ~ 1506862 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTAATGCATCGTGTTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTCAGTGTGAAAAGATGAATCTCAAAATCATTCAGTCACTGCTGGAAAGGGTTCAAATATGCAAAAGATGGTGGAAAACTGAAGAATTTTTGGGACCTGGAGGATTTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGAACAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494343 lncRNA upstream 3028 1503389 ~ 1503601 (+) True G430533
TU493929 lncRNA upstream 66656 1437095 ~ 1439973 (+) True G430161
TU494322 lncRNA upstream 75142 1431089 ~ 1431487 (+) True G430515
TU494321 lncRNA upstream 76613 1429774 ~ 1430016 (+) True CI01000306_01429843_01430151
TU494320 lncRNA upstream 77759 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
TU493901 lncRNA downstream 22290 1529152 ~ 1531757 (+) True G430133
TU494360 lncRNA downstream 86291 1593153 ~ 1593740 (+) False G430549
TU494361 lncRNA downstream 86291 1593153 ~ 1593740 (+) True G430549
TU494366 lncRNA downstream 110212 1617074 ~ 1617414 (+) True G430554
TU494367 lncRNA downstream 110876 1617738 ~ 1617989 (+) True G430555
CI01000306_01481595_01481955.mRNA mRNA upstream 24133 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01429843_01430151.mRNA mRNA upstream 76354 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01387861_01391135.mRNA mRNA upstream 114308 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 128119 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 184335 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01578460_01578838.mRNA mRNA downstream 71598 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 120607 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 132203 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01679537_01704400.mRNA mRNA downstream 172675 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01811531_01821737.mRNA mRNA downstream 304669 1811531 ~ 1821864 (+) True CI01000306_01811531_01821737
TU493892 other upstream 288072 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 355691 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 506727 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1269260 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 641520 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1466294 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2267282 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2267321 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2271190 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile