RNA id: TU494361


Basic Information

Item Value
RNA id TU494361
length 284
lncRNA type intronic
GC content 0.47
exon number 3
gene id G430549
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1593153 ~ 1593740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGTGTTACGCATCACGTTTGCGCTTTAGCAAGAACCAATGAGGTTCATTCTCATGTTACGCAGCACGTTTGAGCTTCCTCAAGAACCAATGAGGTTCATTCTCATGTTACGCAGCACGTTTGAGCTTCCTCAAGAACCAATGAGGTTCATTCTCGAGTTACGCAGCACGTTTGAGCTTCAGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAGCACGTTTGAGCTTCAGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAGCACGTTTGCGCTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493901 lncRNA upstream 61396 1529152 ~ 1531757 (+) True G430133
TU494344 lncRNA upstream 86291 1506629 ~ 1506862 (+) True G430534
TU494343 lncRNA upstream 89552 1503389 ~ 1503601 (+) True G430533
TU493929 lncRNA upstream 153180 1437095 ~ 1439973 (+) True G430161
TU494322 lncRNA upstream 161666 1431089 ~ 1431487 (+) True G430515
TU494366 lncRNA downstream 23334 1617074 ~ 1617414 (+) True G430554
TU494367 lncRNA downstream 23998 1617738 ~ 1617989 (+) True G430555
TU493903 lncRNA downstream 31576 1625316 ~ 1626000 (+) True G430135
TU493850 lncRNA downstream 111631 1705371 ~ 1706072 (+) True G430082
TU493921 lncRNA downstream 118957 1712697 ~ 1714250 (+) True G430153
CI01000306_01578460_01578838.mRNA mRNA upstream 14126 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01481595_01481955.mRNA mRNA upstream 110657 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01429843_01430151.mRNA mRNA upstream 162878 1428813 ~ 1430275 (+) False CI01000306_01429843_01430151
CI01000306_01387861_01391135.mRNA mRNA upstream 200832 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 214643 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01627469_01632656.mRNA mRNA downstream 33729 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 45325 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01679537_01704400.mRNA mRNA downstream 85797 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01811531_01821737.mRNA mRNA downstream 217791 1811531 ~ 1821864 (+) True CI01000306_01811531_01821737
CI01000306_01854835_01855388.mRNA mRNA downstream 261095 1854835 ~ 1855560 (+) True CI01000306_01854835_01855388
TU493892 other upstream 374596 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 442215 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 593251 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1355784 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 554642 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1379416 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2180404 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2180443 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2184312 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile