RNA id: TU495737


Basic Information

Item Value
RNA id TU495737
length 723
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G431737
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1705349 ~ 1706071 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTTTTAAAACATATGTATATTTTCAAGTGTATAATGCGTACATATTCTTTTCATTTAAATAATCTAAATACAATCTGTGATGTTTGATTGACAATTTACAAACAGCTTGTGAAACTGTTCATGACGTCCCAACATCCCGTTTGACACCCAAAATGAGTGAGAATCACGAGGTCCTGATCCGATCCAGAGGAAAGCAAAATAAATAGTGATGCAGTGGACGAACTGGACATGTGATCAGTTTTGGCCTTTCATACGACGACACACAGCTTCATCTGTTTTCTCAGGACTGAAACACGTACGACACACACGAGACAGACGGACTGAAGCAACCATTCACAGCAGAGGTTCTCCTCTTGAGAGAAACATCACTTCCTCCTGAATGTCACTAATGCTGGAGATCAGGAGAGATTCGTGTGTCTCAGACGCTCCTGATCAAATCGCACACACTCGTTAGTGTTTACAGGTTCAAACAAACGAGCCTGAAACCGTTTCCTTCCTGACGGACTGTAAAAACACAAACGTCCATCTGTGACATTTACACACAAACGGCTCATATTTCACCCCAAAATCAAGACATTTTTTTTAGATTATTTTAACATTTTTTTTTAGAACCATTAAGATTTTGTGCATTATGACAGATAATGATGATCATTATGACACATTTCCCCCAAAATTTACTATGCAAAAAAAAAAAAAAATTCTCATTTATATAATAGCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495732 lncRNA downstream 79332 1625345 ~ 1626017 (-) True G431732
TU495764 lncRNA downstream 193079 1508586 ~ 1512270 (-) True G431764
TU495915 lncRNA downstream 201669 1503389 ~ 1503680 (-) True G431890
TU495760 lncRNA downstream 273783 1430802 ~ 1431566 (-) True G431760
TU495774 lncRNA downstream 275243 1429374 ~ 1430106 (-) True G431774
TU495746 lncRNA upstream 21418 1727489 ~ 1732425 (-) True G431746
TU495757 lncRNA upstream 26674 1732745 ~ 1740620 (-) True G431757
TU495747 lncRNA upstream 47343 1753414 ~ 1754504 (-) True G431747
TU495938 lncRNA upstream 79514 1785585 ~ 1786256 (-) True G431913
TU495941 lncRNA upstream 100774 1806845 ~ 1807068 (-) True G431916
CI01000306_01665458_01676209.mRNA mRNA downstream 29126 1664797 ~ 1676223 (-) True CI01000306_01665458_01676209
CI01000306_01633237_01635512.mRNA mRNA downstream 68576 1633073 ~ 1636773 (-) True CI01000306_01633237_01635512
CI01000306_01580628_01611787.mRNA mRNA downstream 93562 1580374 ~ 1611787 (-) True CI01000306_01580628_01611787
CI01000306_01572341_01576690.mRNA mRNA downstream 128659 1572341 ~ 1576690 (-) True CI01000306_01572341_01576690
CI01000306_01514599_01534002.mRNA mRNA downstream 171347 1514355 ~ 1534002 (-) True CI01000306_01514599_01534002
CI01000306_01723684_01726043.mRNA mRNA upstream 17608 1723679 ~ 1726043 (-) False CI01000306_01723684_01726043
CI01000306_01756353_01763570.mRNA mRNA upstream 50104 1756175 ~ 1764246 (-) True CI01000306_01756353_01763570
CI01000306_01775235_01776152.mRNA mRNA upstream 69126 1775197 ~ 1776432 (-) True CI01000306_01775235_01776152
CI01000306_01792788_01804803.mRNA mRNA upstream 86717 1792788 ~ 1804803 (-) True CI01000306_01792788_01804803
CI01000306_01826418_01844251.mRNA mRNA upstream 120026 1826097 ~ 1844251 (-) True CI01000306_01826418_01844251
TU495821 other downstream 392915 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 542011 1163027 ~ 1163338 (-) True G431706
TU495333 other downstream 1221700 448704 ~ 483649 (-) False G431428
TU495726 other upstream 11862 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 11862 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1294165 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 2836652 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3655572 5361643 ~ 5383763 (-) True G433450

Expression Profile