RNA id: TU495938


Basic Information

Item Value
RNA id TU495938
length 441
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G431913
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1785585 ~ 1786256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTGTTATGGTATTAATTTGAATTAGATTTTTATACTTTCAGTTTTCATTTTATTTTTAGTGTCAGTTTTAGTCATTTTGTGTAAATATAAGTTTTTATCTAAGATTTATTTTATTTCAATTAAAGAAAATTATTTTAAATAGTTTTAGTAAAAAAAAAAAGACATTCACACTGATTACGATTCTGTTTTTGTGTCGGATAAATAAATTATATAATTTGATATTTTCCCGTTAGCTTCAGTATAGTTTGCTCACATACTCACTCACACACTCAAAGTACCCTAGCAACCACCCTGAGTACCTTAGCAACTGCATAGCAACACCCTAGCAACCAGCCTGAGTACCCTAGCAACCACTCAGAATACCCTAGCAACCGCATAACAACACCCAACCACCCTTTGTACCTAAGCAACCGCATAGCAACCACCCATATTACCCTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495747 lncRNA downstream 31081 1753414 ~ 1754504 (-) True G431747
TU495757 lncRNA downstream 44965 1732745 ~ 1740620 (-) True G431757
TU495746 lncRNA downstream 53160 1727489 ~ 1732425 (-) True G431746
TU495737 lncRNA downstream 79514 1705349 ~ 1706071 (-) True G431737
TU495732 lncRNA downstream 159568 1625345 ~ 1626017 (-) True G431732
TU495941 lncRNA upstream 20589 1806845 ~ 1807068 (-) True G431916
TU495943 lncRNA upstream 23587 1809843 ~ 1810059 (-) True G431918
TU495751 lncRNA upstream 70541 1856797 ~ 1898332 (-) True G431751
TU495961 lncRNA upstream 112609 1898865 ~ 1899107 (-) True G431933
TU495777 lncRNA upstream 116392 1902648 ~ 1924550 (-) True G431777
CI01000306_01775235_01776152.mRNA mRNA downstream 9153 1775197 ~ 1776432 (-) True CI01000306_01775235_01776152
CI01000306_01756353_01763570.mRNA mRNA downstream 21339 1756175 ~ 1764246 (-) True CI01000306_01756353_01763570
CI01000306_01723684_01726043.mRNA mRNA downstream 59542 1723679 ~ 1726043 (-) False CI01000306_01723684_01726043
CI01000306_01665458_01676209.mRNA mRNA downstream 109362 1664797 ~ 1676223 (-) True CI01000306_01665458_01676209
CI01000306_01633237_01635512.mRNA mRNA downstream 148812 1633073 ~ 1636773 (-) True CI01000306_01633237_01635512
CI01000306_01792788_01804803.mRNA mRNA upstream 6532 1792788 ~ 1804803 (-) True CI01000306_01792788_01804803
CI01000306_01826418_01844251.mRNA mRNA upstream 39841 1826097 ~ 1844251 (-) True CI01000306_01826418_01844251
CI01000306_01859514_01870761.mRNA mRNA upstream 72749 1859005 ~ 1870822 (-) True CI01000306_01859514_01870761
CI01000306_01905901_01906725.mRNA mRNA upstream 119442 1905698 ~ 1907020 (-) False CI01000306_01905901_01906725
CI01000306_01927392_02010649.mRNA mRNA upstream 141077 1927333 ~ 2010774 (-) True CI01000306_01927392_02010649
TU495727 other downstream 36635 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 37363 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 473151 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 622247 1163027 ~ 1163338 (-) True G431706
TU495326 other downstream 1301936 481753 ~ 483649 (-) True G431428
TU496065 other upstream 1213980 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 2756467 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3575387 5361643 ~ 5383763 (-) True G433450
TU497952 other upstream 4254758 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 4409851 6196107 ~ 6197210 (-) True G433985

Expression Profile