RNA id: TU495751


Basic Information

Item Value
RNA id TU495751
length 1674
lncRNA type read_through
GC content 0.33
exon number 2
gene id G431751
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1856797 ~ 1898332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACATATTAAGAGACTGCATATTATTTCTCATTAGCATTAGGAAACCTGTGGGAATGGCTTTTATCACAGAATAATAACTTATCAAGAGCCATAGAACTTTTTGCCTCTTTATATCTTTTGCCATAATCATGAAATAATTAATTAATGAAACAAAATTAAATAAACAGCTGCATCTAATGGAAATTCATGGAAAGACAATACAGCTGTTTCTTATAGAAAGTTATTTTTTTGAACACATTATTACAGTTATACACTGGGAATGACATAGCAATACACATACTTACATAACCAAATAAAAACCTTTATTCTTAAAAGAAAACAAAAGTCTCAACAGTTGTAGGACTAGTAAATGTAAAATAAAACATTCTATGTTTCCATATTGTTAAAGTATAATACTGTGTATTTATATTTTTTTCAGGTTTCTGTTTTTGTGCTTCTGTAGTAAAAATGTACACGCAAATATTCAAAGTAATTAGTATCTTTATAACTACATGACTACACAAGACACTTCTGAACCCAGAAGAGATACACTGGTTTTTGGACCAATTGAGAATCCAGTTCCCAGTATTTTGGCCTCCACCCCACCCACACCAACAGATACACCCGTATCAACTCCAAGTCCCAATTTCACACCAACTGGACCGGCTTTAGCCGATGCGCTGGCAATTTCAGCTCGAGCCATTGCTCCGACTCCAACCACATTGGCTTCAGCTCCAGCTGCGGCGTTGGGACCTTTGGCTTCAGCCTCGAATACACTGTATTCAGCACGAGCTCGTCCAACTCCAGCTTCTGCATAAGCTCCAGCCTTGGGAATCCTCTTTCCTGGTTCGTTTTCAAAAGCTGACGCATATGTTCCACTTCGAGCATAGTTGCTTTCTGTATAGGCATCTCCTGGTCTGTCAAATGTGTCAATTATATTGACCGTGTCGATCACATCAACATCAACTGAGGCGAGTTTCACCTTAGGCTTTCTTGTACCACCATTTTTGTTCTTCCCTGTTGTCTTCCTTGGCTGAGATACATAATGTTCTTCATCTGCAAATAAAACAAATTAGATATAATGCAGTGCAAATATATACAGACATTTAGAAAAACAACAAGCTTTATATGAATTTATGCCATTTCACCTTGAACATTAAAACATTGTGAATGTGATAAGATGGTTTTACTCAACCCTGAAACTGTGAGTTCTGTATTTGGTGTGATTTAGTCTGAGATTTGTTTTGCCTACACAATCTTCCACACAACATAGCTATAATTGTTCAAAAGAACCCTTAAAAGAAATTTTCTGCATCTTCATAATATGTTAGTAATATATTTTGCATGATATATTTTTATTTTAACTCAATATATTTTTTGTTTGATAAAGACAGTTCAGGTTTTATTTATTTGTTTTTTAAATATGACAACAATTACCTATTTCATACAGGCACTGCATTGTCAGAATGTTTGGGAATATTCAGATACATAATATTTACATACATATACCACAGTTAAAAAATGAAACATTTTATAATTAAATATATATACAAATAAAATGCATAAATTAACAAATAACACTAATGTAGTTTTTTTTTTTAAATTTTAGTAAATAAAGACTATTAAAATGCATTTACCAGATTCTTCTTCATGTCCAGGGGAGCTTAAATATCGGTTTTCAGACATTTTTGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495943 lncRNA downstream 46738 1809843 ~ 1810059 (-) True G431918
TU495941 lncRNA downstream 49729 1806845 ~ 1807068 (-) True G431916
TU495938 lncRNA downstream 70541 1785585 ~ 1786256 (-) True G431913
TU495747 lncRNA downstream 102293 1753414 ~ 1754504 (-) True G431747
TU495757 lncRNA downstream 116177 1732745 ~ 1740620 (-) True G431757
TU495961 lncRNA upstream 533 1898865 ~ 1899107 (-) True G431933
TU495777 lncRNA upstream 4316 1902648 ~ 1924550 (-) True G431777
TU495729 lncRNA upstream 7405 1905737 ~ 1906926 (-) True CI01000306_01905901_01906725
TU495963 lncRNA upstream 17222 1915554 ~ 1921585 (-) True G431935
TU495965 lncRNA upstream 73126 1971458 ~ 1972195 (-) True G431937
CI01000306_01826418_01844251.mRNA mRNA downstream 12546 1826097 ~ 1844251 (-) True CI01000306_01826418_01844251
CI01000306_01792788_01804803.mRNA mRNA downstream 51994 1792788 ~ 1804803 (-) True CI01000306_01792788_01804803
CI01000306_01775235_01776152.mRNA mRNA downstream 80365 1775197 ~ 1776432 (-) True CI01000306_01775235_01776152
CI01000306_01756353_01763570.mRNA mRNA downstream 92551 1756175 ~ 1764246 (-) True CI01000306_01756353_01763570
CI01000306_01723684_01726043.mRNA mRNA downstream 130754 1723679 ~ 1726043 (-) False CI01000306_01723684_01726043
CI01000306_01905901_01906725.mRNA mRNA upstream 7366 1905698 ~ 1907020 (-) False CI01000306_01905901_01906725
CI01000306_01927392_02010649.mRNA mRNA upstream 29001 1927333 ~ 2010774 (-) True CI01000306_01927392_02010649
CI01000306_02022802_02080261.mRNA mRNA upstream 124470 2022802 ~ 2080261 (-) True CI01000306_02022802_02080261
CI01000306_02107105_02108186.mRNA mRNA upstream 208562 2106894 ~ 2108266 (-) True CI01000306_02107105_02108186
CI01000306_02123270_02125888.mRNA mRNA upstream 224384 2122716 ~ 2126015 (-) True CI01000306_02123270_02125888
TU495727 other downstream 107847 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 108575 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 544363 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 693459 1163027 ~ 1163338 (-) True G431706
TU495326 other downstream 1373148 481753 ~ 483649 (-) True G431428
TU496065 other upstream 1101904 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 2644391 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3463311 5361643 ~ 5383763 (-) True G433450
TU497952 other upstream 4142682 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 4297775 6196107 ~ 6197210 (-) True G433985

Expression Profile