RNA id: TU494429


Basic Information

Item Value
RNA id TU494429
length 463
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G430598
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1878381 ~ 1883427 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATTTTTTTTTAAAAACAGAGGTGCTTACTGTAAACAACGCAGAATCATCGTATCATCTCCAACAGAACTTTATGACTGGCCCAAATATTCATTATTCTTCCGTCAGCACATCCAGACCTCGTACATGATCATGTTGTGATGGACTAGATAGATGGATGGATGTTCACACACAGCATCAAACTGGTACTTTACTGCTAATGTTACAACTTCACATACCAGAAAAATGCCAGGACTGATTTAAACTGTAGTTTACTGGTAAGTGTGAAAGCCTCTAAAAACACAGAGAGACTTTACTTTCAATATGAGGATGAGTCAGGAAATCTTCAAGCTGAGGATGAAGTGATAAAGACTATACCCTGATAAATGTTTCTGCAAAGTGCATAAATGTCAATGTAAAATGTAAGTTCTTCGAAGCAAGGATGAGCATGTGAGATTCCTAAGCACACTTCTGTAAACACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493913 lncRNA upstream 12848 1846063 ~ 1865533 (+) True G430145
TU494413 lncRNA upstream 67846 1810079 ~ 1810535 (+) True G430585
TU494382 lncRNA upstream 113895 1764254 ~ 1764486 (+) True G430569
TU493921 lncRNA upstream 164131 1712697 ~ 1714250 (+) True G430153
TU493850 lncRNA upstream 172309 1705371 ~ 1706072 (+) True G430082
TU494436 lncRNA downstream 15438 1898865 ~ 1899107 (+) True G430603
TU494441 lncRNA downstream 19692 1903119 ~ 1904347 (+) True G430605
TU494430 lncRNA downstream 22050 1905477 ~ 1906644 (+) True G430599
TU494448 lncRNA downstream 52158 1935585 ~ 1989749 (+) True G430611
TU494469 lncRNA downstream 120275 2003702 ~ 2029292 (+) True G430632
CI01000306_01871685_01875161.mRNA mRNA upstream 3080 1871570 ~ 1875301 (+) True CI01000306_01871685_01875161
CI01000306_01856805_01857982.mRNA mRNA upstream 20218 1856713 ~ 1858163 (+) True CI01000306_01856805_01857982
CI01000306_01854835_01855388.mRNA mRNA upstream 22821 1854835 ~ 1855560 (+) True CI01000306_01854835_01855388
CI01000306_01811531_01821737.mRNA mRNA upstream 56517 1811531 ~ 1821864 (+) True CI01000306_01811531_01821737
CI01000306_01679537_01704400.mRNA mRNA upstream 173430 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01885017_01886202.mRNA mRNA downstream 1491 1884918 ~ 1886594 (+) True CI01000306_01885017_01886202
CI01000306_01887307_01897613.mRNA mRNA downstream 3641 1887068 ~ 1897981 (+) True CI01000306_01887307_01897613
CI01000306_01907357_01910697.mRNA mRNA downstream 23844 1907271 ~ 1911561 (+) True CI01000306_01907357_01910697
CI01000306_02082508_02100892.mRNA mRNA downstream 199081 2082508 ~ 2100892 (+) True CI01000306_02082508_02100892
CI01000306_02109241_02110274.mRNA mRNA downstream 225699 2109126 ~ 2110875 (+) True CI01000306_02109241_02110274
TU493892 other upstream 659824 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 727443 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 878479 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1641012 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 264955 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1089729 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1890717 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1890756 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1894625 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile