RNA id: TU494436


Basic Information

Item Value
RNA id TU494436
length 243
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G430603
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1898865 ~ 1899107 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTCTCTCTCACTGCACAAATAATCAATTCAATAGCCTCACAAGACTGTAACTTAGACTAGGAGCATTTTTAAAGTTATCTTTAGGTTAAATGCTGAATTCACTTAACTTTCTCTTGAATCTGCAAAATCAGTCTTCATCTTTAGCCCCCACCATGTCTTGGAATTATCCTCTGCCATGTCTAATGACCTGCAGGAGTAAAACTATGATAGAGACATATTAGTTCAAAATCAACACAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494429 lncRNA upstream 15438 1878381 ~ 1883427 (+) True G430598
TU493913 lncRNA upstream 33332 1846063 ~ 1865533 (+) True G430145
TU494413 lncRNA upstream 88330 1810079 ~ 1810535 (+) True G430585
TU494382 lncRNA upstream 134379 1764254 ~ 1764486 (+) True G430569
TU493921 lncRNA upstream 184615 1712697 ~ 1714250 (+) True G430153
TU494441 lncRNA downstream 4012 1903119 ~ 1904347 (+) True G430605
TU494430 lncRNA downstream 6370 1905477 ~ 1906644 (+) True G430599
TU494448 lncRNA downstream 36478 1935585 ~ 1989749 (+) True G430611
TU494469 lncRNA downstream 104595 2003702 ~ 2029292 (+) True G430632
TU493869 lncRNA downstream 214498 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
CI01000306_01887307_01897613.mRNA mRNA upstream 884 1887068 ~ 1897981 (+) True CI01000306_01887307_01897613
CI01000306_01885017_01886202.mRNA mRNA upstream 12271 1884918 ~ 1886594 (+) True CI01000306_01885017_01886202
CI01000306_01880262_01881242.mRNA mRNA upstream 17427 1880188 ~ 1881438 (+) True CI01000306_01880262_01881242
CI01000306_01871685_01875161.mRNA mRNA upstream 23564 1871570 ~ 1875301 (+) True CI01000306_01871685_01875161
CI01000306_01856805_01857982.mRNA mRNA upstream 40702 1856713 ~ 1858163 (+) True CI01000306_01856805_01857982
CI01000306_01907357_01910697.mRNA mRNA downstream 8164 1907271 ~ 1911561 (+) True CI01000306_01907357_01910697
CI01000306_02082508_02100892.mRNA mRNA downstream 183401 2082508 ~ 2100892 (+) True CI01000306_02082508_02100892
CI01000306_02109241_02110274.mRNA mRNA downstream 210019 2109126 ~ 2110875 (+) True CI01000306_02109241_02110274
CI01000306_02112910_02114040.mRNA mRNA downstream 213708 2112815 ~ 2114420 (+) False CI01000306_02112910_02114040
CI01000306_02116775_02121990.mRNA mRNA downstream 217265 2116372 ~ 2122477 (+) True CI01000306_02116775_02121990
TU493892 other upstream 680308 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 747927 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 898963 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1661496 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 249275 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1074049 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1875037 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1875076 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1878945 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile