Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU494577 |
| length | 1109 |
| lncRNA type | read_through |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G430739 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 2159462 ~ 2192381 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU493869 | lncRNA | upstream | 45360 | 2113605 ~ 2114102 (+) | True | CI01000306_02112910_02114040 |
| TU494469 | lncRNA | upstream | 130170 | 2003702 ~ 2029292 (+) | True | G430632 |
| TU494448 | lncRNA | upstream | 169713 | 1935585 ~ 1989749 (+) | True | G430611 |
| TU494430 | lncRNA | upstream | 252818 | 1905477 ~ 1906644 (+) | True | G430599 |
| TU494441 | lncRNA | upstream | 255115 | 1903119 ~ 1904347 (+) | True | G430605 |
| TU494585 | lncRNA | downstream | 78396 | 2270777 ~ 2285286 (+) | True | G430745 |
| TU494645 | lncRNA | downstream | 160330 | 2352711 ~ 2352939 (+) | True | G430805 |
| TU494651 | lncRNA | downstream | 193903 | 2386284 ~ 2386558 (+) | True | G430811 |
| TU494675 | lncRNA | downstream | 289725 | 2482106 ~ 2483041 (+) | True | G430834 |
| TU494775 | lncRNA | downstream | 691510 | 2883891 ~ 3238771 (+) | True | G430931 |
| CI01000306_02156224_02158555.mRNA | mRNA | upstream | 741 | 2156224 ~ 2158721 (+) | True | CI01000306_02156224_02158555 |
| CI01000306_02140523_02142280.mRNA | mRNA | upstream | 17161 | 2139495 ~ 2142301 (+) | True | CI01000306_02140523_02142280 |
| CI01000306_02116775_02121990.mRNA | mRNA | upstream | 36985 | 2116372 ~ 2122477 (+) | True | CI01000306_02116775_02121990 |
| CI01000306_02112910_02114040.mRNA | mRNA | upstream | 45042 | 2112815 ~ 2114420 (+) | False | CI01000306_02112910_02114040 |
| CI01000306_02109241_02110274.mRNA | mRNA | upstream | 48587 | 2109126 ~ 2110875 (+) | True | CI01000306_02109241_02110274 |
| CI01000306_02204158_02222866.mRNA | mRNA | downstream | 11546 | 2203927 ~ 2222866 (+) | True | CI01000306_02204158_02222866 |
| CI01000306_02230144_02236022.mRNA | mRNA | downstream | 37763 | 2230144 ~ 2236982 (+) | True | CI01000306_02230144_02236022 |
| CI01000306_02238316_02241601.mRNA | mRNA | downstream | 45935 | 2238316 ~ 2242400 (+) | True | CI01000306_02238316_02241601 |
| CI01000306_02263738_02279937.mRNA | mRNA | downstream | 71237 | 2263618 ~ 2280012 (+) | True | CI01000306_02263738_02279937 |
| CI01000306_02354432_02358965.mRNA | mRNA | downstream | 160800 | 2353181 ~ 2359501 (+) | True | CI01000306_02354432_02358965 |
| TU494557 | other | upstream | 8508 | 2148382 ~ 2150954 (+) | True | G430719 |
| TU493892 | other | upstream | 940905 | 1218095 ~ 1218557 (+) | True | G430124 |
| TU494250 | other | upstream | 1008524 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU494205 | other | upstream | 1159560 | 925544 ~ 999902 (+) | True | G430409 |
| TU494062 | other | upstream | 1922093 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494533 | other | downstream | 780775 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
| TU495068 | other | downstream | 1581763 | 3774144 ~ 3774262 (+) | True | G431188 |
| TU495067 | other | downstream | 1581802 | 3774183 ~ 3774262 (+) | True | G431188 |
| TU495118 | other | downstream | 1585671 | 3778052 ~ 3783019 (+) | False | CI01000306_03778075_03781910 |
| TU495119 | other | downstream | 1585671 | 3778052 ~ 3783019 (+) | True | CI01000306_03778075_03781910 |
