RNA id: TU494585


Basic Information

Item Value
RNA id TU494585
length 244
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G430745
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2270777 ~ 2285286 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACTCTCATGCCGTTCCACACCCGTAAGACCTTCGTTAATCTTCAGAACGCAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494577 lncRNA upstream 78396 2159462 ~ 2192381 (+) True G430739
TU493869 lncRNA upstream 156675 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
TU494469 lncRNA upstream 241485 2003702 ~ 2029292 (+) True G430632
TU494448 lncRNA upstream 281028 1935585 ~ 1989749 (+) True G430611
TU494430 lncRNA upstream 364133 1905477 ~ 1906644 (+) True G430599
TU494645 lncRNA downstream 67425 2352711 ~ 2352939 (+) True G430805
TU494651 lncRNA downstream 100998 2386284 ~ 2386558 (+) True G430811
TU494675 lncRNA downstream 196820 2482106 ~ 2483041 (+) True G430834
TU494775 lncRNA downstream 598605 2883891 ~ 3238771 (+) True G430931
TU494528 lncRNA downstream 750782 3036068 ~ 3054700 (+) True G430690
CI01000306_02238316_02241601.mRNA mRNA upstream 28377 2238316 ~ 2242400 (+) True CI01000306_02238316_02241601
CI01000306_02230144_02236022.mRNA mRNA upstream 33795 2230144 ~ 2236982 (+) True CI01000306_02230144_02236022
CI01000306_02204158_02222866.mRNA mRNA upstream 47911 2203927 ~ 2222866 (+) True CI01000306_02204158_02222866
CI01000306_02183898_02186529.mRNA mRNA upstream 84001 2183898 ~ 2186776 (+) True CI01000306_02183898_02186529
CI01000306_02177474_02180692.mRNA mRNA upstream 89937 2177406 ~ 2180840 (+) True CI01000306_02177474_02180692
CI01000306_02354432_02358965.mRNA mRNA downstream 67895 2353181 ~ 2359501 (+) True CI01000306_02354432_02358965
CI01000306_02359989_02366944.mRNA mRNA downstream 74703 2359989 ~ 2366997 (+) True CI01000306_02359989_02366944
CI01000306_02369579_02380912.mRNA mRNA downstream 84293 2369579 ~ 2381322 (+) True CI01000306_02369579_02380912
CI01000306_02389329_02392416.mRNA mRNA downstream 104043 2389329 ~ 2392960 (+) True CI01000306_02389329_02392416
CI01000306_02398383_02404841.mRNA mRNA downstream 112581 2397867 ~ 2404903 (+) True CI01000306_02398383_02404841
TU494557 other upstream 119823 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1052220 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1119839 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1270875 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2033408 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494533 other downstream 687870 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1488858 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1488897 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1492766 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 1492766 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910

Expression Profile