RNA id: TU494645


Basic Information

Item Value
RNA id TU494645
length 229
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G430805
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2352711 ~ 2352939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACTGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATGTTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494585 lncRNA upstream 67425 2270777 ~ 2285286 (+) True G430745
TU494577 lncRNA upstream 160330 2159462 ~ 2192381 (+) True G430739
TU493869 lncRNA upstream 238609 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
TU494469 lncRNA upstream 323419 2003702 ~ 2029292 (+) True G430632
TU494448 lncRNA upstream 362962 1935585 ~ 1989749 (+) True G430611
TU494651 lncRNA downstream 33345 2386284 ~ 2386558 (+) True G430811
TU494675 lncRNA downstream 129167 2482106 ~ 2483041 (+) True G430834
TU494775 lncRNA downstream 530952 2883891 ~ 3238771 (+) True G430931
TU494528 lncRNA downstream 683129 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA downstream 696958 3049897 ~ 3050294 (+) True G430951
CI01000306_02263738_02279937.mRNA mRNA upstream 72699 2263618 ~ 2280012 (+) True CI01000306_02263738_02279937
CI01000306_02238316_02241601.mRNA mRNA upstream 110311 2238316 ~ 2242400 (+) True CI01000306_02238316_02241601
CI01000306_02230144_02236022.mRNA mRNA upstream 115729 2230144 ~ 2236982 (+) True CI01000306_02230144_02236022
CI01000306_02204158_02222866.mRNA mRNA upstream 129845 2203927 ~ 2222866 (+) True CI01000306_02204158_02222866
CI01000306_02183898_02186529.mRNA mRNA upstream 165935 2183898 ~ 2186776 (+) True CI01000306_02183898_02186529
CI01000306_02354432_02358965.mRNA mRNA downstream 242 2353181 ~ 2359501 (+) True CI01000306_02354432_02358965
CI01000306_02359989_02366944.mRNA mRNA downstream 7050 2359989 ~ 2366997 (+) True CI01000306_02359989_02366944
CI01000306_02369579_02380912.mRNA mRNA downstream 16640 2369579 ~ 2381322 (+) True CI01000306_02369579_02380912
CI01000306_02389329_02392416.mRNA mRNA downstream 36390 2389329 ~ 2392960 (+) True CI01000306_02389329_02392416
CI01000306_02398383_02404841.mRNA mRNA downstream 44928 2397867 ~ 2404903 (+) True CI01000306_02398383_02404841
TU494557 other upstream 201757 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1134154 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1201773 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1352809 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2115342 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494533 other downstream 620217 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1421205 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1421244 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1425113 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 1425113 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910

Expression Profile