RNA id: TU494651


Basic Information

Item Value
RNA id TU494651
length 275
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G430811
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2386284 ~ 2386558 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGATGACGTGTTTTTGTAGGCCAATCCGGAAGTTAGCGGCGCACGGGTTCCCTCGATCGAAAGCCTATGCATTTTTCCCATAGACTTTTGGAAAATCGCAAAAAATAAGCTCTGTGTTTAACAAAGGGTCATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATATATTTTGAAGCCTAAATAAAGTCATCAGATATAAAAAGCTAACAGTAGGCTATAAACGGACTACAGCACACCATGGTCGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494645 lncRNA upstream 33345 2352711 ~ 2352939 (+) True G430805
TU494585 lncRNA upstream 100998 2270777 ~ 2285286 (+) True G430745
TU494577 lncRNA upstream 193903 2159462 ~ 2192381 (+) True G430739
TU493869 lncRNA upstream 272182 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
TU494469 lncRNA upstream 356992 2003702 ~ 2029292 (+) True G430632
TU494675 lncRNA downstream 95548 2482106 ~ 2483041 (+) True G430834
TU494775 lncRNA downstream 497333 2883891 ~ 3238771 (+) True G430931
TU494528 lncRNA downstream 649510 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA downstream 663339 3049897 ~ 3050294 (+) True G430951
TU494561 lncRNA downstream 666454 3055130 ~ 3055694 (+) True G430723
CI01000306_02369579_02380912.mRNA mRNA upstream 4962 2369579 ~ 2381322 (+) True CI01000306_02369579_02380912
CI01000306_02359989_02366944.mRNA mRNA upstream 19287 2359989 ~ 2366997 (+) True CI01000306_02359989_02366944
CI01000306_02354432_02358965.mRNA mRNA upstream 26783 2353181 ~ 2359501 (+) True CI01000306_02354432_02358965
CI01000306_02263738_02279937.mRNA mRNA upstream 106272 2263618 ~ 2280012 (+) True CI01000306_02263738_02279937
CI01000306_02238316_02241601.mRNA mRNA upstream 143884 2238316 ~ 2242400 (+) True CI01000306_02238316_02241601
CI01000306_02389329_02392416.mRNA mRNA downstream 2771 2389329 ~ 2392960 (+) True CI01000306_02389329_02392416
CI01000306_02398383_02404841.mRNA mRNA downstream 11309 2397867 ~ 2404903 (+) True CI01000306_02398383_02404841
CI01000306_02552479_02576156.mRNA mRNA downstream 165542 2552100 ~ 2576536 (+) True CI01000306_02552479_02576156
CI01000306_02591160_02596388.mRNA mRNA downstream 204602 2591160 ~ 2597618 (+) True CI01000306_02591160_02596388
CI01000306_02614704_02617766.mRNA mRNA downstream 227974 2614532 ~ 2618085 (+) True CI01000306_02614704_02617766
TU494557 other upstream 235330 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1167727 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1235346 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1386382 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2148915 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494533 other downstream 586598 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1387586 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1387625 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1391494 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 1391494 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910

Expression Profile