RNA id: TU496065



Basic Information


Item Value
RNA id TU496065
length 2124
RNA type TUCP
GC content 0.40
exon number 7
gene id G432022
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3000236 ~ 3003891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAAAAAAAGTGATCAGAGGTTATGGCATGAGCTCAATAAGTTGGAAAAGGTTACATGGCTGTCACTAACATTTCTTTCTAGACTGGAGTGGAAAAACAATATAAAGATTCTGTTCAAGTTGATGTTAAAATAAGTCTATCCTTAAATCTTGACAATTACAAAATAAAACAGCTCAAAATCAGAACAGACTTTTTTTTTGGCAAAGTTGATTTCCCTCACATACCCTTCAGAAAAAACCCATTCCACCATACCCTGAAATAATACAACCTAATAGTGATATCTTCAAGTAACAGATACAGGAGTTTTTTTTTTTGTTTTTTTTTTTATCTTATGGGAACAGTCATTACACATTAAGTTAAAACCAGGTGGAGACTCAAAGCCATGAAGACACAAGCTGTAGGATACAGAAGACAAAAAGGTGTGGGGAGAGAGAGAGAATTGGTTCACATTTACACTGGAAACGAGACCCTGATATATACGCTGTTTAAAAAAAAAAAAAATAATTATTCACATTCTGCATGTTTAAGAAAAATAATAGTTGAAACTGTAGTCCCCTGCAGCTCATCCAAGCATCCTACTTTGTGGTCTGGATATAGTTTACACAAGAGTTCCAACTCCAGTTTAAAAGTGAACAGTTCATGTAACACTCACTCAAACACACAGCTTTACATGGTCATATTTCCCATAAAATACCACACCTGGTGTACACATTTCTTCTCCTAAAAAGGCGTGTGGGTGTACTTAAGCAATTCTTTGATTTTTTTTTTTTTTAATCTTCTATTAAAATATAGAATTCATTATTAATACAGGAGGGCTAAAAATACAGCAAAACTAAAAATGAAACGATCCACAAAGCAATTTGTAGCTGAATACAGTAGCTATAGGACCACGCAAGTTCATAGTTCAGATATCCTTGGGCCCCTTTGTCCAGAGATGGAAGGGGAGTGAGACAGTAAAAGTGTTCAAAAGGTCAAGCCACTGATTTTCCAGTTCATGGCGTAAAGACCATGCAATCTTGTATACAGGCTCTCCATACTTCATTCTTAAAAGATCGACCCAATAAAACCTACAAGATTACAGGTCACAGCCTAAAAAAAAAATTAAAGATCAGCCACCCAAATCATGACATTTAGGCCTCCTCTCGACACTATGCTTGCTTCACATCTTTCCCTTGCCAGGTTCACAACCTGCTGGAAATCACTTAGGCTAAAAGTATCTATTTAAAGAAAAAAAAAAAAAAAAAGGATGGGGTGGAGGGAAAAGTAAAAATCACAAAGAGGATTTAAAATTCAAAGTCTTTATCAGCCATGTCAATAGCCCAGGCAAATTTCTCACGCTGAGTTTTGTTGTAGATCTTTTCTATCGGGATGCCAAACTTCTTGCACCAAGCTACTGAGATACGTGGGTCCAGGTAGTTGAGCTTGGAGGTACCCAGGGCAATCTGCTTGTTTTCCTCCCGGTCGGTGGCCTGTACCTCCAGCTTCATCAGCTGCTCCTCGACCCTCTGCACGAGTTTCTTCTTGGTCTCCACGGCCTTCTTGGATTTCTCATCTCTGCGTATTTTGGCGTCAGCCTTGGCACTTTTCAGTTCTCTTTTAGCATCAGCAAGCTGTTCCTTCTTTGCGTCAATCTTTGTCTGAAGATTTTGCATGGACTTCTCAAATGTCTTGGGTGGTGCCCTCTGGTGGTTACACAGGATGGCTACTGCTCGGTTAGCCCGATTGTAGGAGAGGATCTTCGCAGGAACGTTTTCTTCAGAATTTGTGAGTTCTTTCAGCTGTTGCTGTAGTGTGATGGAGGCGTTGTAAGTACGGAACACTTTAGCCGTAAGGCCATCCATCAACTCCTGAAGATGCTTGTTCAAAATGGAGGTATTGAGACGATCAAAGAGGTCATCCTCCGGCTCCTTGTCCTCCATGAACAGCTGGAGATTTTTGAAAACCCTCTTTTCAACGGGGACTTTGTTGTAGTATCTAATGGAGTCTTTACCGAGGAAGTCAAACTCCACGACAAACTCCTGGCCGTCCAGTTCTTGATGGAGAGTTAGATGTTCCACTCTAAGTGAGCAGCAGCCCACTGTGTCAGCCGTCTCTCCTTCTTCCTTTTCATTACCTGCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU496119 lncRNA downstream 43892 2952249 ~ 2956344 (-) True G432051
TU496096 lncRNA downstream 118503 2876373 ~ 2881733 (-) True G432032
TU496280 lncRNA downstream 241477 2758459 ~ 2758759 (-) True G432196
TU496255 lncRNA downstream 256385 2743133 ~ 2743851 (-) True G432173
TU496227 lncRNA downstream 257963 2740941 ~ 2742273 (-) True G432153
TU496369 lncRNA upstream 119586 3123477 ~ 3125954 (-) True G432280
TU496377 lncRNA upstream 133394 3137285 ~ 3137732 (-) True G432285
TU496373 lncRNA upstream 134900 3138791 ~ 3139881 (-) True G432282
TU496371 lncRNA upstream 145049 3148940 ~ 3152959 (-) True G432281
TU496421 lncRNA upstream 227620 3231511 ~ 3277198 (-) True G432308
CI01000306_02966994_02968675.mRNA mRNA downstream 31050 2965937 ~ 2969186 (-) True CI01000306_02966994_02968675
CI01000306_02919027_02938762.mRNA mRNA downstream 61474 2918888 ~ 2938762 (-) True CI01000306_02919027_02938762
CI01000306_02601172_02604783.mRNA mRNA downstream 395453 2601000 ~ 2604783 (-) True CI01000306_02601172_02604783
CI01000306_02485219_02510419.mRNA mRNA downstream 489817 2485131 ~ 2510419 (-) True CI01000306_02485219_02510419
CI01000306_02455495_02470846.mRNA mRNA downstream 529390 2454988 ~ 2470846 (-) True CI01000306_02455495_02470846
CI01000306_03006241_03009198.mRNA mRNA upstream 2299 3006190 ~ 3009356 (-) True CI01000306_03006241_03009198
CI01000306_03044394_03045362.mRNA mRNA upstream 39485 3043376 ~ 3046205 (-) True CI01000306_03044394_03045362
CI01000306_03070842_03073585.mRNA mRNA upstream 66687 3070578 ~ 3073634 (-) True CI01000306_03070842_03073585
CI01000306_03086600_03106758.mRNA mRNA upstream 82619 3086510 ~ 3108215 (-) True CI01000306_03086600_03106758
CI01000306_03258305_03268722.mRNA mRNA upstream 253332 3257223 ~ 3268722 (-) True CI01000306_03258305_03268722
TU495727 other downstream 1251286 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 1252014 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 1687802 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 1836898 1163027 ~ 1163338 (-) True G431706
TU495333 other downstream 2516587 448704 ~ 483649 (-) False G431428
TU497393 other upstream 1538832 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 2357752 5361643 ~ 5383763 (-) True G433450
TU497952 other upstream 3037123 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 3192216 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 3351289 6355180 ~ 6361643 (-) True G434016

Expression Profile