RNA id: TU494554


Basic Information

Item Value
RNA id TU494554
length 523
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id G430716
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3098644 ~ 3099359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCCCTGCTGTAGAGCAGACATGGGGATTGTTTTAATTATAGTGGTGGTGCCCGGTTTGGTGGTAGTGGGGGACATGCCACTGATGCCCAAGATAGTGGGCTTGTTTCCTGTGCCACCTGCTTGACTGGTGGTAATTATGGTGGTTGGTTTTCCATCCGCAGATGTAACCAGCTTCAGAATGGTGCCGGGTGGAAGGGGACCCTTTGTCTGTATAATCTGAGTCAGTGGGTTGGAGGTGGCCTGTCCAGTCACAGCAGCCGATTGGACTGGTTTGGTCTGTACCATTGACACCATCTTGCCCAAGTTGGAGATCAGGTTTCCTCCCATGGAAAGTGGGCTCTTGACAAGAGTGATGGTCTTGGTGACTCCGCCCACCATAGTGGTCACAACCTGAGCTTGCTGGGCTACGGTAACTGTGCCGGACTTGTGTACTGTGATGATGGGCCGAGCACCCGTAGTGGGACTGGACACTGTCGGAGTGCCCACCTGTGCAGCGGCGGTCTTCAGCATGCGAGTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494561 lncRNA upstream 42574 3055130 ~ 3055694 (+) True G430723
TU494528 lncRNA upstream 43944 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA upstream 48350 3049897 ~ 3050294 (+) True G430951
TU494675 lncRNA upstream 615603 2482106 ~ 2483041 (+) True G430834
TU494651 lncRNA upstream 712086 2386284 ~ 2386558 (+) True G430811
TU494841 lncRNA downstream 181372 3280731 ~ 3280990 (+) True G430987
TU494911 lncRNA downstream 260418 3359777 ~ 3370252 (+) True G431039
TU494985 lncRNA downstream 388164 3487523 ~ 3488001 (+) True G431107
TU495003 lncRNA downstream 418695 3518054 ~ 3518312 (+) True G431125
TU495007 lncRNA downstream 432535 3531894 ~ 3532107 (+) True G431129
CI01000306_03081487_03082695.mRNA mRNA upstream 14335 3080835 ~ 3084309 (+) True CI01000306_03081487_03082695
CI01000306_03062452_03066451.mRNA mRNA upstream 31988 3062452 ~ 3066656 (+) True CI01000306_03062452_03066451
CI01000306_03048314_03055936.mRNA mRNA upstream 42546 3048314 ~ 3056098 (+) False CI01000306_03048314_03055936
CI01000306_03018466_03023859.mRNA mRNA upstream 74553 3018134 ~ 3024091 (+) True CI01000306_03018466_03023859
CI01000306_02995035_03002605.mRNA mRNA upstream 95977 2995035 ~ 3002667 (+) True CI01000306_02995035_03002605
CI01000306_03118178_03120842.mRNA mRNA downstream 18629 3117988 ~ 3120923 (+) True CI01000306_03118178_03120842
CI01000306_03123572_03128332.mRNA mRNA downstream 24075 3123434 ~ 3129725 (+) True CI01000306_03123572_03128332
CI01000306_03132695_03139713.mRNA mRNA downstream 33336 3132695 ~ 3139724 (+) True CI01000306_03132695_03139713
CI01000306_03141095_03149372.mRNA mRNA downstream 41736 3141095 ~ 3149434 (+) True CI01000306_03141095_03149372
CI01000306_03163659_03168243.mRNA mRNA downstream 63914 3163273 ~ 3168338 (+) True CI01000306_03163659_03168243
TU494533 other upstream 119487 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU494557 other upstream 947690 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1880087 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1947706 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 2098742 925544 ~ 999902 (+) True G430409
TU495068 other downstream 674785 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 674824 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 678693 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 678693 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 708874 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile