RNA id: TU495003


Basic Information

Item Value
RNA id TU495003
length 259
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G431125
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3518054 ~ 3518312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAGTATTGTTCATTTTGTTCATTTTTAACTAAAGGAGTTAACTAATGAAACCTAACTAAAAATCCCATCTAGCTACACTTTTAAGATTTATAAAAAAAAAAATAAAAAAAAAAAACAGGAAGTACTTCTACATTGATCTACTTCATTCTTCTATAACCTTTGGCAGGAAACACTCCAGCATTCATTTTTAGCTGTTTTCCCATTCGGATTTTCCCATGGAAGCAATGTGTCAGGTCAGTGTGATAGTCGAATCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494985 lncRNA upstream 30053 3487523 ~ 3488001 (+) True G431107
TU494911 lncRNA upstream 147802 3359777 ~ 3370252 (+) True G431039
TU494841 lncRNA upstream 237064 3280731 ~ 3280990 (+) True G430987
TU494554 lncRNA upstream 418695 3098644 ~ 3099359 (+) True G430716
TU494561 lncRNA upstream 461984 3055130 ~ 3055694 (+) True G430723
TU495007 lncRNA downstream 13582 3531894 ~ 3532107 (+) True G431129
TU495008 lncRNA downstream 14292 3532604 ~ 3537455 (+) True G431130
TU495013 lncRNA downstream 20473 3538785 ~ 3596369 (+) True G431134
TU495111 lncRNA downstream 248850 3767162 ~ 3767393 (+) True G431226
TU495113 lncRNA downstream 251685 3769997 ~ 3770246 (+) True G431228
CI01000306_03270390_03277409.mRNA mRNA upstream 240498 3270390 ~ 3277556 (+) True CI01000306_03270390_03277409
CI01000306_03248839_03256675.mRNA mRNA upstream 260991 3248839 ~ 3257063 (+) True CI01000306_03248839_03256675
CI01000306_03244498_03247567.mRNA mRNA upstream 270226 3242896 ~ 3247828 (+) True CI01000306_03244498_03247567
CI01000306_03219408_03238461.mRNA mRNA upstream 279580 3219408 ~ 3238474 (+) True CI01000306_03219408_03238461
CI01000306_03214469_03216852.mRNA mRNA upstream 301174 3214469 ~ 3216880 (+) True CI01000306_03214469_03216852
CI01000306_03612105_03612431.mRNA mRNA downstream 93493 3611805 ~ 3612761 (+) True CI01000306_03612105_03612431
CI01000306_03642939_03646831.mRNA mRNA downstream 124627 3642939 ~ 3647153 (+) True CI01000306_03642939_03646831
CI01000306_03658929_03661523.mRNA mRNA downstream 140328 3658640 ~ 3662015 (+) True CI01000306_03658929_03661523
CI01000306_03666143_03671601.mRNA mRNA downstream 147831 3666143 ~ 3672675 (+) True CI01000306_03666143_03671601
CI01000306_03677906_03697637.mRNA mRNA downstream 159594 3677906 ~ 3697792 (+) True CI01000306_03677906_03697637
TU494533 other upstream 538897 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU494557 other upstream 1367100 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 2299497 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 2367116 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 2518152 925544 ~ 999902 (+) True G430409
TU495068 other downstream 255832 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 255871 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 259740 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 259740 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 289921 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile