RNA id: TU495116


Basic Information

Item Value
RNA id TU495116
length 239
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G431231
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3771158 ~ 3771396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGACGCTGAGCAAGTGCACTCAACTTCTTTGGTCGACCATGGCGAGGCCTGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACGCCATCTTTATGTAGAGCAACAATTATTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495113 lncRNA upstream 912 3769997 ~ 3770246 (+) True G431228
TU495111 lncRNA upstream 3765 3767162 ~ 3767393 (+) True G431226
TU495013 lncRNA upstream 174789 3538785 ~ 3596369 (+) True G431134
TU495008 lncRNA upstream 233703 3532604 ~ 3537455 (+) True G431130
TU495007 lncRNA upstream 239051 3531894 ~ 3532107 (+) True G431129
TU495129 lncRNA downstream 17583 3788979 ~ 3789321 (+) True G431243
TU495128 lncRNA downstream 19380 3790776 ~ 3791987 (+) True G431242
TU495136 lncRNA downstream 26275 3797671 ~ 3797894 (+) True G431249
TU495138 lncRNA downstream 28820 3800216 ~ 3800611 (+) True G431251
TU495139 lncRNA downstream 29238 3800634 ~ 3800857 (+) True G431252
CI01000306_03704267_03746574.mRNA mRNA upstream 24237 3704267 ~ 3746921 (+) True CI01000306_03704267_03746574
CI01000306_03677906_03697637.mRNA mRNA upstream 73366 3677906 ~ 3697792 (+) True CI01000306_03677906_03697637
CI01000306_03666143_03671601.mRNA mRNA upstream 98483 3666143 ~ 3672675 (+) True CI01000306_03666143_03671601
CI01000306_03658929_03661523.mRNA mRNA upstream 109143 3658640 ~ 3662015 (+) True CI01000306_03658929_03661523
CI01000306_03642939_03646831.mRNA mRNA upstream 124005 3642939 ~ 3647153 (+) True CI01000306_03642939_03646831
CI01000306_03772689_03777211.mRNA mRNA downstream 1293 3772689 ~ 3777523 (+) False CI01000306_03772689_03777211
CI01000306_03778075_03781910.mRNA mRNA downstream 6679 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_03807268_03810946.mRNA mRNA downstream 35872 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03827847_03828735.mRNA mRNA downstream 54341 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03889176_03889334.mRNA mRNA downstream 116952 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
TU494533 other upstream 792001 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU494557 other upstream 1620204 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 2552601 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 2620220 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 2771256 925544 ~ 999902 (+) True G430409
TU495068 other downstream 2748 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2787 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 6656 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 6656 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 36837 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile