RNA id: TU495138


Basic Information

Item Value
RNA id TU495138
length 396
lncRNA type intronic
GC content 0.40
exon number 1
gene id G431251
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3800216 ~ 3800611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGACGCGTGTTGCTTTTTCAAATGTACATTATAAGCGACTCAAACTCGCAGTGCTTTCAGATGGATTAGCATTTGGAGCCATACTTTATTGACAAGCTGCGCATAAAAAAATAATTGCAGCTTTTGCGATTTCATGATTGACCCTTCGCCGGGAGTTTGATTGACAAGCGATCTAACTAATCATAACGCCGAATCCGCCATTTTGTCCGACAAAGCAGTCAGGAGTTAGAAGATTAACCTCGGTGGACTTGAACTTGAAAAATGGTGTGTATTGACATCTTTCCGCGTTTGAAACAACATTCCTTCTCATGTTCATTCATGTTTATTTAATGCTATAAATTAACTAGTAGGAAGAGATGATCGGTTCGTGAGCCGCTTGAACTGAGGTGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495136 lncRNA upstream 2322 3797671 ~ 3797894 (+) True G431249
TU495128 lncRNA upstream 8229 3790776 ~ 3791987 (+) True G431242
TU495129 lncRNA upstream 10895 3788979 ~ 3789321 (+) True G431243
TU495116 lncRNA upstream 28820 3771158 ~ 3771396 (+) True G431231
TU495113 lncRNA upstream 29970 3769997 ~ 3770246 (+) True G431228
TU495139 lncRNA downstream 23 3800634 ~ 3800857 (+) True G431252
TU495124 lncRNA downstream 2639 3803250 ~ 3803641 (+) True G431238
TU495123 lncRNA downstream 3773 3804384 ~ 3805161 (+) True G431237
TU495229 lncRNA downstream 214874 4015485 ~ 4015758 (+) True G431334
TU495259 lncRNA downstream 215301 4015912 ~ 4016335 (+) True G431364
CI01000306_03778075_03781910.mRNA mRNA upstream 18174 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_03772689_03777211.mRNA mRNA upstream 22693 3772689 ~ 3777523 (+) False CI01000306_03772689_03777211
CI01000306_03704267_03746574.mRNA mRNA upstream 53295 3704267 ~ 3746921 (+) True CI01000306_03704267_03746574
CI01000306_03677906_03697637.mRNA mRNA upstream 102424 3677906 ~ 3697792 (+) True CI01000306_03677906_03697637
CI01000306_03666143_03671601.mRNA mRNA upstream 127541 3666143 ~ 3672675 (+) True CI01000306_03666143_03671601
CI01000306_03807268_03810946.mRNA mRNA downstream 6657 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03827847_03828735.mRNA mRNA downstream 25126 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03889176_03889334.mRNA mRNA downstream 87737 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04050451_04054257.mRNA mRNA downstream 249721 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_04077126_04078242.mRNA mRNA downstream 276515 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
TU495118 other upstream 17197 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 17197 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 22666 3774144 ~ 3774262 (+) True G431188
TU495067 other upstream 22666 3774183 ~ 3774262 (+) True G431188
TU494533 other upstream 821059 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495134 other downstream 7622 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU496727 other downstream 525791 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 721571 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 721599 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1858317 5658928 ~ 5660169 (+) True G432958

Expression Profile