RNA id: TU495124


Basic Information

Item Value
RNA id TU495124
length 392
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G431238
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3803250 ~ 3803641 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATCTCTAGCTGCTCCACGTGCCTCTGCAGAACAGGCACATGACTGGCTTTGGTCTCAAGCTCCTTCACTTTCTTGAGTCCACTCAGCACAGCTTGTCTGGCTTCCTCCACCCTCTTCCTCATCTCCACCTGCTCCTTCTTTAGAGTCCTGTTACATTCCTCCAGCATCAGCACTGTCTCGCGTGATACTCGCAGTTCTTGCTCCAGCTTCTGGTTGAAGAACATGGCCTCCTCGATCTGCACGTCCCTGGAATTCCGGATGAGCTCAACTTCTCTCAGGAAACTCTGGATGTCCTTCAGGTTCCCAGAAATGCTGGGCTTCTGGGCTGTTCGCCTTTGGTGGGCGATGAAACAGCCACCCTCTGGTTTATGTTTCGAGTGGCTTTTCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495139 lncRNA upstream 2393 3800634 ~ 3800857 (+) True G431252
TU495138 lncRNA upstream 2639 3800216 ~ 3800611 (+) True G431251
TU495136 lncRNA upstream 5356 3797671 ~ 3797894 (+) True G431249
TU495128 lncRNA upstream 11263 3790776 ~ 3791987 (+) True G431242
TU495129 lncRNA upstream 13929 3788979 ~ 3789321 (+) True G431243
TU495123 lncRNA downstream 743 3804384 ~ 3805161 (+) True G431237
TU495229 lncRNA downstream 211844 4015485 ~ 4015758 (+) True G431334
TU495259 lncRNA downstream 212271 4015912 ~ 4016335 (+) True G431364
TU495263 lncRNA downstream 224081 4027722 ~ 4028046 (+) True G431368
TU495279 lncRNA downstream 295108 4098749 ~ 4099046 (+) True G431383
CI01000306_03778075_03781910.mRNA mRNA upstream 21208 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_03772689_03777211.mRNA mRNA upstream 25727 3772689 ~ 3777523 (+) False CI01000306_03772689_03777211
CI01000306_03704267_03746574.mRNA mRNA upstream 56329 3704267 ~ 3746921 (+) True CI01000306_03704267_03746574
CI01000306_03677906_03697637.mRNA mRNA upstream 105458 3677906 ~ 3697792 (+) True CI01000306_03677906_03697637
CI01000306_03666143_03671601.mRNA mRNA upstream 130575 3666143 ~ 3672675 (+) True CI01000306_03666143_03671601
CI01000306_03807268_03810946.mRNA mRNA downstream 3627 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03827847_03828735.mRNA mRNA downstream 22096 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03889176_03889334.mRNA mRNA downstream 84707 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04050451_04054257.mRNA mRNA downstream 246691 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_04077126_04078242.mRNA mRNA downstream 273485 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
TU495118 other upstream 20231 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 20231 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 25700 3774144 ~ 3774262 (+) True G431188
TU495067 other upstream 25700 3774183 ~ 3774262 (+) True G431188
TU494533 other upstream 824093 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495134 other downstream 4592 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU496727 other downstream 522761 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 718541 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 718569 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1855287 5658928 ~ 5660169 (+) True G432958

Expression Profile