RNA id: TU495123



Basic Information


Item Value
RNA id TU495123
length 778
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G431237
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3804384 ~ 3805161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCGAGCATCACTGCTTTGAAGAGCCGCGCGCATGTCCTCCACCAATTCCCTGAGACTCGCATTTTCCTCCTCAAGTTTGGCTATCCTGTCCTCGGCCTCCTCAAGGGCCACGATTTCCTCGTAACACTCCCTGGTGCAGGATCCCAGCTGCCTACAACCTGATGTGTGTCTATCCTCAGTGGGAGAAGAAGGCTCTCCACTTTCACGCTTATTACTGGTACCCAACGACAGCAGCTTCTCGCGCCGCCTCAAAGGGCTCCGGAGTCTGATCTGCGTCTCTATATGCTCGCTCTCCTTGCCAACCAACAACCTCCCATTCTCATACTGACACCCAGCTTTGGTACTGAAATAACCGCAGAGTTTTGCGTGAAACTGCCTGAAGCTGAACTCTTTGGGTAGATTATCCAATATCCCCGCGCATTCCTCTAGATCACACTCTTTATTGAGTCCTAAAATCTCGCAAAGAATGTTAAAATCCTCGGCTGGTATTTTTCCATCTCCCTGACAGTCTAGATGATGAAATATCTCTTGGAGGTATTGATCCAGCCCGGTTGCGAGGACTATAATTTCGTTTTCCACTCCACGGTCTAGTCCGTAATGATACGCCAGAGTGCTCACTATCCATTGTGTCCTGCGCGCGGGTCGGCTGTATGGATCGCATGCGTCCGACTTTTCCATCCTTTTTCCCCTCACAAGAATTCCATTTATAGAGTCTAAATGGATTAATGGATTCAACAGATCCTCTAAGCACACAAACAGCATACCAAGTTCATGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU495124 lncRNA upstream 743 3803250 ~ 3803641 (+) True G431238
TU495139 lncRNA upstream 3527 3800634 ~ 3800857 (+) True G431252
TU495138 lncRNA upstream 3773 3800216 ~ 3800611 (+) True G431251
TU495136 lncRNA upstream 6490 3797671 ~ 3797894 (+) True G431249
TU495128 lncRNA upstream 12397 3790776 ~ 3791987 (+) True G431242
TU495229 lncRNA downstream 210324 4015485 ~ 4015758 (+) True G431334
TU495259 lncRNA downstream 210751 4015912 ~ 4016335 (+) True G431364
TU495263 lncRNA downstream 222561 4027722 ~ 4028046 (+) True G431368
TU495279 lncRNA downstream 293588 4098749 ~ 4099046 (+) True G431383
TU496667 lncRNA downstream 395483 4200644 ~ 4200874 (+) True G432537
CI01000306_03778075_03781910.mRNA mRNA upstream 22342 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_03772689_03777211.mRNA mRNA upstream 26861 3772689 ~ 3777523 (+) False CI01000306_03772689_03777211
CI01000306_03704267_03746574.mRNA mRNA upstream 57463 3704267 ~ 3746921 (+) True CI01000306_03704267_03746574
CI01000306_03677906_03697637.mRNA mRNA upstream 106592 3677906 ~ 3697792 (+) True CI01000306_03677906_03697637
CI01000306_03666143_03671601.mRNA mRNA upstream 131709 3666143 ~ 3672675 (+) True CI01000306_03666143_03671601
CI01000306_03807268_03810946.mRNA mRNA downstream 2107 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03827847_03828735.mRNA mRNA downstream 20576 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03889176_03889334.mRNA mRNA downstream 83187 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04050451_04054257.mRNA mRNA downstream 245171 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_04077126_04078242.mRNA mRNA downstream 271965 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
TU495118 other upstream 21365 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 21365 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 26834 3774144 ~ 3774262 (+) True G431188
TU495067 other upstream 26834 3774183 ~ 3774262 (+) True G431188
TU494533 other upstream 825227 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495134 other downstream 3072 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU496727 other downstream 521241 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 717021 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 717049 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1853767 5658928 ~ 5660169 (+) True G432958

Expression Profile