RNA id: TU495229


Basic Information

Item Value
RNA id TU495229
length 274
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G431334
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4015485 ~ 4015758 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAATCCCTTATTATACCTTCTAAGCAGTGTTGGAGAGGGTGACTAAAACAAATATTGGCTAACAGCAATATTTAAAGGGATAGTTCACCCAAAAATGAAAATTCACTTGTTGAATGACTTTCTTTCTTCTGTGGAACACAAAAGATATTTTGAAGAATGTTTAAACCAGTTGTTTCCATACAATGAAAATCAGTGGGGTCCAACAAACCTTGGACACCAAAGACTTTCATTGTATGGTCAAAAAAAGGGTGAGCCTATAGAGACAGAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495123 lncRNA upstream 210324 3804384 ~ 3805161 (+) True G431237
TU495124 lncRNA upstream 211844 3803250 ~ 3803641 (+) True G431238
TU495139 lncRNA upstream 214628 3800634 ~ 3800857 (+) True G431252
TU495138 lncRNA upstream 214874 3800216 ~ 3800611 (+) True G431251
TU495136 lncRNA upstream 217591 3797671 ~ 3797894 (+) True G431249
TU495259 lncRNA downstream 154 4015912 ~ 4016335 (+) True G431364
TU495263 lncRNA downstream 11964 4027722 ~ 4028046 (+) True G431368
TU495279 lncRNA downstream 82991 4098749 ~ 4099046 (+) True G431383
TU496667 lncRNA downstream 184886 4200644 ~ 4200874 (+) True G432537
TU496682 lncRNA downstream 206454 4222212 ~ 4226252 (+) True G432552
CI01000306_03889176_03889334.mRNA mRNA upstream 126114 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_03827847_03828735.mRNA mRNA upstream 186640 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03807268_03810946.mRNA mRNA upstream 204242 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03778075_03781910.mRNA mRNA upstream 233443 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_03772689_03777211.mRNA mRNA upstream 237962 3772689 ~ 3777523 (+) False CI01000306_03772689_03777211
CI01000306_04050451_04054257.mRNA mRNA downstream 34574 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_04077126_04078242.mRNA mRNA downstream 61368 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04111278_04162816.mRNA mRNA downstream 95035 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04253810_04255748.mRNA mRNA downstream 237405 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04454619_04454783.mRNA mRNA downstream 438861 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
TU495134 other upstream 206487 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 232466 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 232466 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 237935 3774144 ~ 3774262 (+) True G431188
TU495067 other upstream 237935 3774183 ~ 3774262 (+) True G431188
TU496727 other downstream 310644 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 506424 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 506452 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1643170 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1964755 5980513 ~ 5980671 (+) True G433126

Expression Profile