RNA id: TU495279


Basic Information

Item Value
RNA id TU495279
length 298
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G431383
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4098749 ~ 4099046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAACTTAAGTTAGTCTAAATTAAAAGAAATGAGTTCATACAACTCAAAACAATAAGAGTTCAGTTTACTTAAAATATATCAGTTCTGTGAACTCAAAAGAAAAAGAAAGTTCTAAATACTCATAACAGTTAATTTAACTGAACTAATTTGTTACATTTAAGTTTGTCCTACTCAAAACAATTAAGTATTTTGAGCATTAGGGTTTACAGTGTGTCTTGACTAATTATAACCTATTTAACTACTGTATGATGTTAATTACATTAAGTGCACAAACAACATGCTTGCGAAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495263 lncRNA upstream 70703 4027722 ~ 4028046 (+) True G431368
TU495259 lncRNA upstream 82414 4015912 ~ 4016335 (+) True G431364
TU495229 lncRNA upstream 82991 4015485 ~ 4015758 (+) True G431334
TU495123 lncRNA upstream 293588 3804384 ~ 3805161 (+) True G431237
TU495124 lncRNA upstream 295108 3803250 ~ 3803641 (+) True G431238
TU496667 lncRNA downstream 101598 4200644 ~ 4200874 (+) True G432537
TU496682 lncRNA downstream 123166 4222212 ~ 4226252 (+) True G432552
TU496738 lncRNA downstream 132878 4231924 ~ 4232162 (+) True G432592
TU496739 lncRNA downstream 133235 4232281 ~ 4233063 (+) True G432593
TU496769 lncRNA downstream 201000 4300046 ~ 4300489 (+) True G432622
CI01000306_04077126_04078242.mRNA mRNA upstream 20218 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 44347 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 209378 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_03827847_03828735.mRNA mRNA upstream 269904 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03807268_03810946.mRNA mRNA upstream 287506 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_04111278_04162816.mRNA mRNA downstream 11747 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04253810_04255748.mRNA mRNA downstream 154117 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04454619_04454783.mRNA mRNA downstream 355573 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 390304 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 470737 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
TU495134 other upstream 289751 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 315730 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 315730 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 321199 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 227356 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 423136 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 423164 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1559882 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1881467 5980513 ~ 5980671 (+) True G433126

Expression Profile