RNA id: TU496667


Basic Information

Item Value
RNA id TU496667
length 231
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G432537
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4200644 ~ 4200874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACATTCACATTTATATGGGAACATGTATGTGCAATATATGTACACAATAAAGGATAAAACTTTATGAATGTAATGCTATTTTTGTCTTCATTTATAAATATTTTATATGTATCAATATATAGCCATACATGGTCAATGCATATATTGCAGTATATTGAAAAATATAAGCACAAGTTTCCCATATATGGAAATGTGTTATGTAATATATCGCATTATATTTTGCAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495279 lncRNA upstream 101598 4098749 ~ 4099046 (+) True G431383
TU495263 lncRNA upstream 172598 4027722 ~ 4028046 (+) True G431368
TU495259 lncRNA upstream 184309 4015912 ~ 4016335 (+) True G431364
TU495229 lncRNA upstream 184886 4015485 ~ 4015758 (+) True G431334
TU495123 lncRNA upstream 395483 3804384 ~ 3805161 (+) True G431237
TU496682 lncRNA downstream 21338 4222212 ~ 4226252 (+) True G432552
TU496738 lncRNA downstream 31050 4231924 ~ 4232162 (+) True G432592
TU496739 lncRNA downstream 31407 4232281 ~ 4233063 (+) True G432593
TU496769 lncRNA downstream 99172 4300046 ~ 4300489 (+) True G432622
TU496774 lncRNA downstream 105775 4306649 ~ 4306870 (+) True G432627
CI01000306_04111278_04162816.mRNA mRNA upstream 36800 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 122113 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 146242 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 311273 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_03827847_03828735.mRNA mRNA upstream 371799 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_04253810_04255748.mRNA mRNA downstream 52289 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04454619_04454783.mRNA mRNA downstream 253745 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 288476 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 368909 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 485247 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
TU495134 other upstream 391646 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 417625 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 417625 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 423094 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 125528 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 321308 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 321336 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1458054 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1779639 5980513 ~ 5980671 (+) True G433126

Expression Profile