RNA id: TU496682


Basic Information

Item Value
RNA id TU496682
length 483
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G432552
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4222212 ~ 4226252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTTATGGAGGTTCATGAGTGTCCTGGCGTTCTGCTTGATCTCCCGTGCGTCTACGAAGACCTTTGAGAAGCTCAGACCGTAGTGAATATCAGCCGAGCATCCTCCCCACTTCCAGCCTTCCTCCTGGTTGTAGAAGCCCTGCTTCTCCTTGTCACAGCCACAGCCGCTCAGCGTACCTTGCGTGCAGGCCGCCGTGATGGCATGGGCGACCCCGGCAGCGATGATGGCGTAGGTGAAGGCTGCCTCCTTACTGCCCACTTTCAACTCTTTTCCAAAGACAGTTCTTTCCCCGAGGGCCGAGCAGTTCCACCTTCCATTTTTGAATTGAAACTGACACTCATTGATTCCCATTTGTGCTCCTTCTCCAATGACAATGATAGCGTCAGGCCGGCTTTGACAGATAGTCCTTTGACGAGGGGCCAAACCAGGAATTTTGTTACAGATAATACTTGCTCCCAACGCAACCACGGAGGAAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496667 lncRNA upstream 21338 4200644 ~ 4200874 (+) True G432537
TU495279 lncRNA upstream 123166 4098749 ~ 4099046 (+) True G431383
TU495263 lncRNA upstream 194166 4027722 ~ 4028046 (+) True G431368
TU495259 lncRNA upstream 205877 4015912 ~ 4016335 (+) True G431364
TU495229 lncRNA upstream 206454 4015485 ~ 4015758 (+) True G431334
TU496738 lncRNA downstream 5672 4231924 ~ 4232162 (+) True G432592
TU496739 lncRNA downstream 6029 4232281 ~ 4233063 (+) True G432593
TU496769 lncRNA downstream 73794 4300046 ~ 4300489 (+) True G432622
TU496774 lncRNA downstream 80397 4306649 ~ 4306870 (+) True G432627
TU496775 lncRNA downstream 80869 4307121 ~ 4307340 (+) True G432628
CI01000306_04111278_04162816.mRNA mRNA upstream 58368 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 143681 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 167810 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 332841 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_03827847_03828735.mRNA mRNA upstream 393367 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_04253810_04255748.mRNA mRNA downstream 26911 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04454619_04454783.mRNA mRNA downstream 228367 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 263098 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 343531 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 459869 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
TU495134 other upstream 413214 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 439193 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 439193 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 444662 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 100150 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 295930 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 295958 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1432676 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1754261 5980513 ~ 5980671 (+) True G433126

Expression Profile