RNA id: TU496769


Basic Information

Item Value
RNA id TU496769
length 444
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G432622
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4300046 ~ 4300489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTATTGTGTCTTACAAACGGCGGTTGCTAGCAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTCGACGTCATCATGACAAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGTTAAGTATTCATACACAGCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGTTGATCCGTGACCATGGTGTGCTGTAGTCCGTTTATAGGCTACTGTTAGCTTTTCATATCTGACGACTTTATTTAGGCTTTAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGCCTACGGGAAAAATGCATAGGCTTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496739 lncRNA upstream 66983 4232281 ~ 4233063 (+) True G432593
TU496738 lncRNA upstream 67884 4231924 ~ 4232162 (+) True G432592
TU496682 lncRNA upstream 73794 4222212 ~ 4226252 (+) True G432552
TU496667 lncRNA upstream 99172 4200644 ~ 4200874 (+) True G432537
TU495279 lncRNA upstream 201000 4098749 ~ 4099046 (+) True G431383
TU496774 lncRNA downstream 6160 4306649 ~ 4306870 (+) True G432627
TU496775 lncRNA downstream 6632 4307121 ~ 4307340 (+) True G432628
TU496776 lncRNA downstream 6857 4307346 ~ 4307693 (+) True G432629
TU496710 lncRNA downstream 44540 4345029 ~ 4347871 (+) True G432571
TU496703 lncRNA downstream 60092 4360581 ~ 4362231 (+) True G432568
CI01000306_04253810_04255748.mRNA mRNA upstream 43205 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04111278_04162816.mRNA mRNA upstream 136202 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 221515 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 245644 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 410675 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04454619_04454783.mRNA mRNA downstream 154130 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 188861 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 269294 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 385632 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_04789240_04793134.mRNA mRNA downstream 487681 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
TU495134 other upstream 491048 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 517027 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 517027 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 522496 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 25913 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 221693 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 221721 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1358439 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1680024 5980513 ~ 5980671 (+) True G433126

Expression Profile