RNA id: TU496776


Basic Information

Item Value
RNA id TU496776
length 348
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G432629
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4307346 ~ 4307693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTAAAGTGCATTTGAATCGGCATCTCCAAAATGACGGATAATGAAAGACAGTTGACCGCCGTCGGTGTGTGGTACGATGACGATTCATATTCTTTAAAGGCGTATAGTTGGTATACAGTAGGTGGTGGAGGGAATGTCAAATATTATGGAAGATTATAGAGTCTTTTGGACACATTTGTTTATTTGCCTTGCGCTCAAAGCACTCTTGCACTTCAGAGTTAAGGAGGGTGCTCGGCCTTTGTGGCTTCTGACAATGAGGGTTGTCACAGAAGTGGGATCAAGTGAGCTTTTGCTAAAGTTCGGCTGAAAACGGCCCGTCTTACTTGCCGAGGCATGGAGTGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496775 lncRNA upstream 6 4307121 ~ 4307340 (+) True G432628
TU496774 lncRNA upstream 476 4306649 ~ 4306870 (+) True G432627
TU496769 lncRNA upstream 6857 4300046 ~ 4300489 (+) True G432622
TU496739 lncRNA upstream 74283 4232281 ~ 4233063 (+) True G432593
TU496738 lncRNA upstream 75184 4231924 ~ 4232162 (+) True G432592
TU496710 lncRNA downstream 37336 4345029 ~ 4347871 (+) True G432571
TU496703 lncRNA downstream 52888 4360581 ~ 4362231 (+) True G432568
TU496732 lncRNA downstream 110499 4418192 ~ 4419629 (+) True G432586
TU496688 lncRNA downstream 148442 4456135 ~ 4506862 (+) True G432556
TU496825 lncRNA downstream 201746 4509439 ~ 4509709 (+) True G432672
CI01000306_04253810_04255748.mRNA mRNA upstream 50505 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04111278_04162816.mRNA mRNA upstream 143502 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 228815 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 252944 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 417975 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04454619_04454783.mRNA mRNA downstream 146926 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 181657 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 262090 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 378428 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_04789240_04793134.mRNA mRNA downstream 480477 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
TU495134 other upstream 498348 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 524327 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 524327 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 529796 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 18709 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 214489 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 214517 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1351235 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1672820 5980513 ~ 5980671 (+) True G433126

Expression Profile