RNA id: TU496825


Basic Information

Item Value
RNA id TU496825
length 271
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G432672
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4509439 ~ 4509709 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAACATAAAAATACTATACATATTTATATATTTTGCTATTGTATTGTGAAGTGACACTTTAATAAACTTTTCTATACTCCTCTGATTATGTAATGGTAAATATTACAATATCATAGCACAACAACAGTGATCAGCAATAATGATAAGCCTAATACTCACAATAAAAATAATAAGGTCATATAGATCATAACACAGTCTCAGAGGTAAGAAGTGGATTATCCTTCACCTGAAATGTTTGTCTTTTTTTATCCTGAAATGCGAGGCAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496688 lncRNA upstream 2577 4456135 ~ 4506862 (+) True G432556
TU496732 lncRNA upstream 89810 4418192 ~ 4419629 (+) True G432586
TU496703 lncRNA upstream 147208 4360581 ~ 4362231 (+) True G432568
TU496710 lncRNA upstream 161568 4345029 ~ 4347871 (+) True G432571
TU496776 lncRNA upstream 201746 4307346 ~ 4307693 (+) True G432629
TU496838 lncRNA downstream 20608 4530317 ~ 4530526 (+) True G432680
TU496858 lncRNA downstream 57901 4567610 ~ 4567836 (+) True G432697
TU496865 lncRNA downstream 70888 4580597 ~ 4586360 (+) True G432703
TU496913 lncRNA downstream 312441 4822150 ~ 4822382 (+) True G432745
TU496939 lncRNA downstream 352619 4862328 ~ 4862623 (+) True G432768
CI01000306_04489350_04503649.mRNA mRNA upstream 3690 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04454619_04454783.mRNA mRNA upstream 53887 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04253810_04255748.mRNA mRNA upstream 252598 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04111278_04162816.mRNA mRNA upstream 345595 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 430908 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04570147_04574537.mRNA mRNA downstream 60074 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 176412 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_04789240_04793134.mRNA mRNA downstream 278461 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04859604_04861501.mRNA mRNA downstream 349829 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04863197_04868703.mRNA mRNA downstream 353488 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
TU496727 other upstream 181617 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 700441 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 726420 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 726420 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495067 other upstream 731889 3774183 ~ 3774262 (+) True G431188
TU496836 other downstream 12473 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 12501 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1149219 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1470804 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 1596434 6106983 ~ 6107080 (+) True G433684

Expression Profile