RNA id: TU496858


Basic Information

Item Value
RNA id TU496858
length 227
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G432697
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4567610 ~ 4567836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTCACATAAATTACTTTCATCAACAATCAATTCAGTATCTTCAGGTGTTCATATCAAAATGCTGAATCAATATAAAAATCAACTGTACCCCTGTGTGGACTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGCCATTCCACTCCCGTAAGACCTTTGTTCATCTTCAGAACAGAGTATACTTTTTGTGCACAAAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496838 lncRNA upstream 37084 4530317 ~ 4530526 (+) True G432680
TU496825 lncRNA upstream 57901 4509439 ~ 4509709 (+) True G432672
TU496688 lncRNA upstream 60748 4456135 ~ 4506862 (+) True G432556
TU496732 lncRNA upstream 147981 4418192 ~ 4419629 (+) True G432586
TU496703 lncRNA upstream 205379 4360581 ~ 4362231 (+) True G432568
TU496865 lncRNA downstream 12761 4580597 ~ 4586360 (+) True G432703
TU496913 lncRNA downstream 254314 4822150 ~ 4822382 (+) True G432745
TU496939 lncRNA downstream 294492 4862328 ~ 4862623 (+) True G432768
TU496966 lncRNA downstream 376696 4944532 ~ 4944764 (+) True G432795
TU497080 lncRNA downstream 644955 5212791 ~ 5213089 (+) True G432907
CI01000306_04489350_04503649.mRNA mRNA upstream 61861 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04454619_04454783.mRNA mRNA upstream 112058 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04253810_04255748.mRNA mRNA upstream 310769 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04111278_04162816.mRNA mRNA upstream 403766 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 489079 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04570147_04574537.mRNA mRNA downstream 1947 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 118285 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_04789240_04793134.mRNA mRNA downstream 220334 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04859604_04861501.mRNA mRNA downstream 291702 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04863197_04868703.mRNA mRNA downstream 295361 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
TU496836 other upstream 45074 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 45074 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 239788 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 758612 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 784591 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 1091092 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1412677 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 1538307 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 1540775 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 2551481 7119317 ~ 7119859 (+) True G434545

Expression Profile