RNA id: TU497085


Basic Information

Item Value
RNA id TU497085
length 501
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G432912
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5222818 ~ 5223318 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCGAGTAAAACAAACAATTACACTAAAGGTTGGGCTCGAAAGTGTTACTTATGACATGTCAAAGAAACCTAATCCATGGATATTGGGATGCAGCCAGGAATCGTGTTTCCTGACATTATATGTGCCTGATTTTGACGCTGGGGAAATACATAAAACAAATCTGCCTTTATATAAATACAATATAGGTAGGTCTAAATCGGAGTGATCACTTATATCAATGCTATATATATCGTCATATCGTCCAGCCCTAAAACTTGTATAGTTTCTGTCAGTGTTTATTTAAAAAACACCCAATTATGCAGAATATAAGATGGTAAATATTTAATTGATGAGTTGTCAACACAATATATAACAATACAATATATAGGGTATGATTTTACCCCAAAATCCAACATTTTGACACAAAATGATAACTGCAAAACATGTTTCTTTGCCTGGAGTCCAGCTGTTTCTGTGAATTGCAGTGACCTATTTGCTTCTTTTTCTGCAGCTTTCAGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497080 lncRNA upstream 9729 5212791 ~ 5213089 (+) True G432907
TU496966 lncRNA upstream 278054 4944532 ~ 4944764 (+) True G432795
TU496939 lncRNA upstream 360195 4862328 ~ 4862623 (+) True G432768
TU496913 lncRNA upstream 400436 4822150 ~ 4822382 (+) True G432745
TU496865 lncRNA upstream 636458 4580597 ~ 4586360 (+) True G432703
TU497091 lncRNA downstream 15929 5239247 ~ 5239471 (+) True G432918
TU497098 lncRNA downstream 23007 5246325 ~ 5246557 (+) True G432925
TU497075 lncRNA downstream 24902 5248220 ~ 5249076 (+) True G432902
TU497076 lncRNA downstream 25934 5249252 ~ 5251194 (+) True G432903
TU497078 lncRNA downstream 39117 5262435 ~ 5263344 (+) True G432905
CI01000306_04958429_04977273.mRNA mRNA upstream 245400 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 354024 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 361248 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 428664 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 469717 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 135513 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 144596 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 166255 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 175996 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 232842 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 700282 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 700282 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 894996 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1413820 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1439799 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 435610 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 757195 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 882825 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 885293 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1895999 7119317 ~ 7119859 (+) True G434545

Expression Profile