RNA id: TU497106


Basic Information

Item Value
RNA id TU497106
length 316
lncRNA type intronic
GC content 0.37
exon number 1
gene id G432933
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5284794 ~ 5285109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTACAATTTTTTGGGTGAACTATTCACCATTTATTTATTTCAACATTTCTTTCTTCATTTTCTTTTATATAATATGCTATGGTTTCTGCAACAATTGATTGAAAATTTCCACATTAGTGCTAGGCAGGATAGTGCTGCGAGACATTTAGCATATTGGTGTACCACAGCACCACCTGACATTGGCAGGACATCACTAAGCAACATTCATATTCATGCAGGCATTGATATTTCCCTCCTTATGTCCTGCTCAGTCATTCTGCACTTTGTCATGCATCCAGCTAATGTGATAATCCAACACATCTCTTCATCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497100 lncRNA upstream 19571 5264963 ~ 5265223 (+) True G432927
TU497078 lncRNA upstream 21450 5262435 ~ 5263344 (+) True G432905
TU497076 lncRNA upstream 33600 5249252 ~ 5251194 (+) True G432903
TU497075 lncRNA upstream 35718 5248220 ~ 5249076 (+) True G432902
TU497098 lncRNA upstream 38237 5246325 ~ 5246557 (+) True G432925
TU497107 lncRNA downstream 109 5285218 ~ 5285452 (+) True G432934
TU497108 lncRNA downstream 1191 5286300 ~ 5286572 (+) True G432935
TU497109 lncRNA downstream 4067 5289176 ~ 5289394 (+) True G432936
TU497110 lncRNA downstream 4395 5289504 ~ 5289731 (+) True G432937
TU497111 lncRNA downstream 5720 5290829 ~ 5291094 (+) True G432938
CI01000306_04958429_04977273.mRNA mRNA upstream 307376 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 416000 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 423224 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 490640 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 531693 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 73722 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 82805 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 104464 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 114205 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 171051 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 762258 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 762258 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 956972 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1475796 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1501775 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 373819 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 695404 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 821034 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 823502 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1834208 7119317 ~ 7119859 (+) True G434545

Expression Profile