RNA id: TU497108


Basic Information

Item Value
RNA id TU497108
length 273
lncRNA type intronic
GC content 0.38
exon number 1
gene id G432935
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5286300 ~ 5286572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCACTGCAATGCCACCTTCAGAATGAGAAGAACAGATCCACACTGCCCTCTACTGCTGGATAAAGTTGACAATATGGAAGCCAGGTCACACTTCTGTGCTGCAAAACAGGAAAATCTGACAAATGTGAACATCTCATCCATCTGAGATGGACTGCTAATTTAGATTTCTGCTATTTTTCAAAATGAGAATTAAAAGTATTTTTTAGTAATTTTGTCTTTATTTACTCACCCACATGTCATTCCAAACCTGTACATTTTGAAGGAATGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497107 lncRNA upstream 848 5285218 ~ 5285452 (+) True G432934
TU497106 lncRNA upstream 1191 5284794 ~ 5285109 (+) True G432933
TU497100 lncRNA upstream 21077 5264963 ~ 5265223 (+) True G432927
TU497078 lncRNA upstream 22956 5262435 ~ 5263344 (+) True G432905
TU497076 lncRNA upstream 35106 5249252 ~ 5251194 (+) True G432903
TU497109 lncRNA downstream 2604 5289176 ~ 5289394 (+) True G432936
TU497110 lncRNA downstream 2932 5289504 ~ 5289731 (+) True G432937
TU497111 lncRNA downstream 4257 5290829 ~ 5291094 (+) True G432938
TU497112 lncRNA downstream 6337 5292909 ~ 5293130 (+) True G432939
TU497178 lncRNA downstream 10434 5297006 ~ 5297307 (+) True G432996
CI01000306_04958429_04977273.mRNA mRNA upstream 308882 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 417506 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 424730 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 492146 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 533199 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 72259 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 81342 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 103001 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 112742 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 169588 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 763764 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 763764 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 958478 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1477302 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1503281 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 372356 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 693941 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 819571 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 822039 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1832745 7119317 ~ 7119859 (+) True G434545

Expression Profile