RNA id: TU497180


Basic Information

Item Value
RNA id TU497180
length 311
lncRNA type intronic
GC content 0.38
exon number 1
gene id G432998
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5301745 ~ 5302055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTGCCACTTAAGCTGCCAACATCCACTTACTGTCAGCCGAGATTACTTTTTGCCTATTGCCATAAAGCTCTTTTCAACAACATCTCACAAATAGCCATGGGCAGCATATGTAAGGCCATTATTGTTGTTGTGAAAACAACAAAAAAGAGCAAAGTTTGAACAATTTTACTTTGCACTTAGAATGATTAGAAATCTGATATAAAAGGGTAAAAAAAGGTTCCATTCAAGGCTCTTACAGCTCTTGGTTCCAAGACGTAGCTCCAGTTCTCCCTATTTCTGCTCATTTCTCTGTATGTCCATCAAGTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497178 lncRNA upstream 4438 5297006 ~ 5297307 (+) True G432996
TU497112 lncRNA upstream 8615 5292909 ~ 5293130 (+) True G432939
TU497111 lncRNA upstream 10651 5290829 ~ 5291094 (+) True G432938
TU497110 lncRNA upstream 12014 5289504 ~ 5289731 (+) True G432937
TU497109 lncRNA upstream 12351 5289176 ~ 5289394 (+) True G432936
TU497182 lncRNA downstream 7675 5309730 ~ 5309958 (+) True G433000
TU497183 lncRNA downstream 8188 5310243 ~ 5310575 (+) True G433001
TU497184 lncRNA downstream 9104 5311159 ~ 5311411 (+) True G433002
TU497189 lncRNA downstream 20371 5322426 ~ 5330534 (+) True G433007
TU497192 lncRNA downstream 28811 5330866 ~ 5331414 (+) True G433010
CI01000306_04958429_04977273.mRNA mRNA upstream 324327 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 432951 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 440175 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 507591 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 548644 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 56776 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 65859 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 87518 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 97259 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 154105 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 779209 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 779209 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 973923 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1492747 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1518726 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 356873 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 678458 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 804088 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 806556 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1817262 7119317 ~ 7119859 (+) True G434545

Expression Profile