RNA id: TU497182


Basic Information

Item Value
RNA id TU497182
length 229
lncRNA type intronic
GC content 0.31
exon number 1
gene id G433000
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5309730 ~ 5309958 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATTTACTAAAAATAAATGGCTTATAAGGGTCATTCGTTCAAGATTAAAATTACACTGGTTGTGCTGTAGGTTTTTGATTCACAAAAAGAACTGGCTAATAAGAGTCATTCATTCGGGAATCATATTACACTAGTTGTGCTGTACGTTTCTGATTCACAAAAAAGAATCACCTCATAAAATCTATTTGGAATTCAGACAACATTCAAAATTCTTGATTCACTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497180 lncRNA upstream 7675 5301745 ~ 5302055 (+) True G432998
TU497178 lncRNA upstream 12423 5297006 ~ 5297307 (+) True G432996
TU497112 lncRNA upstream 16600 5292909 ~ 5293130 (+) True G432939
TU497111 lncRNA upstream 18636 5290829 ~ 5291094 (+) True G432938
TU497110 lncRNA upstream 19999 5289504 ~ 5289731 (+) True G432937
TU497183 lncRNA downstream 285 5310243 ~ 5310575 (+) True G433001
TU497184 lncRNA downstream 1201 5311159 ~ 5311411 (+) True G433002
TU497189 lncRNA downstream 12468 5322426 ~ 5330534 (+) True G433007
TU497192 lncRNA downstream 20908 5330866 ~ 5331414 (+) True G433010
TU497193 lncRNA downstream 21483 5331441 ~ 5332340 (+) True G433011
CI01000306_04958429_04977273.mRNA mRNA upstream 332312 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 440936 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 448160 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 515576 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 556629 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 48873 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 57956 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 79615 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 89356 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 146202 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 787194 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 787194 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 981908 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1500732 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1526711 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 348970 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 670555 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 796185 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 798653 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1809359 7119317 ~ 7119859 (+) True G434545

Expression Profile