RNA id: TU497194


Basic Information

Item Value
RNA id TU497194
length 352
lncRNA type intronic
GC content 0.38
exon number 1
gene id G433012
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5333106 ~ 5333457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGGTTAGCATTATGCTATTGATTCTTTTGTGCCTGCTAGCAGACTATGGCAGTCATTAGGCTGCACACTGTCAGAGAGTACGTAGGTGTACTTGAGAACCCTCTAGCAGGTTTCAAAGCAGGGATATTAGACCACAGTTAAGTAAGTATTTGTGGAGTTCAGCTGCTTTTACAGATGTTAAAGATTATAGTTACTGTGAAAATGTGTTGCCATGATAACACCACATGCATATTTTGTGCTTTATGTAACTTTAAAGAACAGATAACCTCAGTCTCACATTTACAAGGCAAAATATTTTGAATAAAAAATAAAGGCGGAATGATCCGAGCAAAAGATGTTCTCACTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497193 lncRNA upstream 766 5331441 ~ 5332340 (+) True G433011
TU497192 lncRNA upstream 1692 5330866 ~ 5331414 (+) True G433010
TU497189 lncRNA upstream 2572 5322426 ~ 5330534 (+) True G433007
TU497184 lncRNA upstream 21695 5311159 ~ 5311411 (+) True G433002
TU497183 lncRNA upstream 22531 5310243 ~ 5310575 (+) True G433001
TU497187 lncRNA downstream 3564 5337021 ~ 5337344 (+) True G433005
TU497188 lncRNA downstream 6318 5339775 ~ 5345924 (+) True G433006
TU497201 lncRNA downstream 12571 5346028 ~ 5346433 (+) True G433019
TU497202 lncRNA downstream 12988 5346445 ~ 5346666 (+) True G433020
TU497203 lncRNA downstream 13536 5346993 ~ 5347741 (+) True G433021
CI01000306_04958429_04977273.mRNA mRNA upstream 355688 4958341 ~ 4977418 (+) True CI01000306_04958429_04977273
CI01000306_04863197_04868703.mRNA mRNA upstream 464312 4863197 ~ 4868794 (+) True CI01000306_04863197_04868703
CI01000306_04859604_04861501.mRNA mRNA upstream 471536 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
CI01000306_04789240_04793134.mRNA mRNA upstream 538952 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04686121_04753101.mRNA mRNA upstream 580005 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_05358831_05362667.mRNA mRNA downstream 25374 5358831 ~ 5362710 (+) True CI01000306_05358831_05362667
CI01000306_05368199_05371572.mRNA mRNA downstream 34457 5367914 ~ 5371880 (+) True CI01000306_05368199_05371572
CI01000306_05390270_05392867.mRNA mRNA downstream 56116 5389573 ~ 5393074 (+) True CI01000306_05390270_05392867
CI01000306_05399614_05410516.mRNA mRNA downstream 65857 5399314 ~ 5410886 (+) True CI01000306_05399614_05410516
CI01000306_05456160_05473514.mRNA mRNA downstream 122703 5456160 ~ 5473514 (+) True CI01000306_05456160_05473514
TU496836 other upstream 810570 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 810570 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 1005284 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 1524108 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495119 other upstream 1550087 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU497140 other downstream 325471 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 647056 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 772686 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 775154 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1785860 7119317 ~ 7119859 (+) True G434545

Expression Profile