RNA id: TU497685


Basic Information

Item Value
RNA id TU497685
length 1687
RNA type TUCP
GC content 0.49
exon number 3
gene id G433450
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5361643 ~ 5383763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAGGGGAGCTCATTCAGCCTACGAGAGCAAGGAGGAGTGAAGCGGTTAGTCTGGAACTTGCTGCCTGTGGGAAAGTAAACAACAGTATTTGCCGCCCTCTCAGAGGCAATAGCTACAGACCGACAGCAGCGGATAAACAGAGGATGAGGATGTGTTCAAGGAGCCAGCTGATTTCATAGCAGGAAGTGCATGGGAGGTTGTTGGGATTAAAGTCCCTCTTGGGAGGTGCTGAAGCTTTCCTGTGGAAGTACTACTGAGGACAAAAAGAGCCTATGTCCAAAAGTTCATCTCATCAGCAGCTGGAGGAGGATGTGGAGGAAGATGAGCAAAGAGAGAAATTCAAATTTGAAGATGAGTTTGACAAACAAAAAGGCAAGACTGTATCTGGAGATGAGACATCAGGCAAATGTAGTGAGCCTAAGACACAGTCAAGCAAATTGGAAGAGACTCAGGAAAAACACACAGATCATCCCTCTCAAGCCATCACTACAGTTACAGCTGCTGGTCAGGAGTGTACCAGTACTTATAGCACTAATTTGTCAGCCACCAACAAAGGGTAAGTAACAAATTAGTTCACTTCAAAACACCAGACAGACATTTGCTAATGATATTTTATTGACGTTTCAAAACACAAACATCAGCCAAAAACAGGTAGTCAGCTATTGTTGCAACAGCCTGAACATGCTCTTGGATGAATGTGGCCTTCTTTGGGCAGGTCTAGGAGCATTTTGACCTGTGACAGACTGGTAATTCAATTGCGTTGGAAACTGAAGTCCAGGTTGCACTGACTGCGACATAGGCTCAACGCTTGAGACAAAGAGATTGCTGGGCTGCTCCAGGGCTTGGGAACCTGATCTGGATACAGATTGGTAACTTGATTGCCCAGGCATTGAAGAGGTCTGGAATCCAGGCTGAGAGACGGTCTCATAACTTGACTGTACCTGGTACCTGGACTGCACTGGCATGGCTAGGGATGAGTAGCCAGACTGAGATAGAGACTGGTGGCTAGGCAGCATTTCAGGCTGGGAACCAGACTGCCCTGCCATAGAAGACATCTGGTATCCAGACTGAGAAACTTTCTCAGAACTTGACTGTGCCTGGTACTTGGACTGCACTGGCATGGCTTGGGAATTGTAGCTGGGCTGACCTAGAGACTGGCGGCTAGGCAGTATTTGAGGCTGGTAGTCTCCAAGAGTTCCCAGCTTGCTTGAGGGTCCATAGCTGGATTGTATAGGTTTCACTAGGGGCCGATACACCTCTTGCCCTGGCTTGGCCAGAGATTGGTAGCAAGGCTGCTGCATTTGCCTAGAAGGTTGACCACTGGGCTTAAATACAGAACCATAACTGGATGGTCCAGGCTTGGCAAGAGGCAAGCAGCTTGGTTGTACCTTTGGATCAAGAGGCTGTCGGCTTGGAAGCACTGGAGGCTGGTAGCTAGGCTGTTCAGGCAGCTGAGCTGGTCTGAAAACAGACTGGAGTGTGGATTGCAGTGGTCTGGGAGGGACTTGGTGGCTGGGTTGCACCATAGACTCATAGGTAGGCTGCCCAGTCCTCACTGGGGCCTGGTAACTGGCCTGAACAAGAGACTCTATACGTTGAGCCAAGGATGGAGAACTAGGTCTGGATGGAGGCTGATACCTAGTCTGTCCTGGTTGGGCTGCAAGCTGGTAACTGGGCTGCGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497722 lncRNA downstream 39372 5322024 ~ 5322271 (-) True G433487
TU497721 lncRNA downstream 41364 5319625 ~ 5320279 (-) True G433486
TU497720 lncRNA downstream 42387 5318987 ~ 5319256 (-) True G433485
TU497717 lncRNA downstream 44570 5316857 ~ 5317073 (-) True G433482
TU497716 lncRNA downstream 46300 5314817 ~ 5315343 (-) True G433481
TU497739 lncRNA upstream 77770 5461533 ~ 5461751 (-) True G433504
TU497768 lncRNA upstream 91358 5475121 ~ 5475405 (-) True G433532
TU497774 lncRNA upstream 107172 5490935 ~ 5491156 (-) True G433536
TU497777 lncRNA upstream 114211 5497974 ~ 5498184 (-) True G433539
TU497779 lncRNA upstream 115578 5499341 ~ 5499574 (-) True G433541
CI01000306_05250669_05357112.mRNA mRNA downstream 4531 5250669 ~ 5357112 (-) True CI01000306_05250669_05357112
CI01000306_05007257_05008896.mRNA mRNA downstream 352747 5006631 ~ 5008896 (-) True CI01000306_05007257_05008896
CI01000306_04883506_04908414.mRNA mRNA downstream 452123 4883403 ~ 4909520 (-) True CI01000306_04883506_04908414
CI01000306_04870702_04872912.mRNA mRNA downstream 488706 4870528 ~ 4872937 (-) True CI01000306_04870702_04872912
CI01000306_04848327_04856522.mRNA mRNA downstream 505121 4848327 ~ 4856522 (-) True CI01000306_04848327_04856522
CI01000306_05414347_05434965.mRNA mRNA upstream 30508 5414271 ~ 5434965 (-) True CI01000306_05414347_05434965
CI01000306_05452986_05453456.mRNA mRNA upstream 69101 5452864 ~ 5453456 (-) True CI01000306_05452986_05453456
CI01000306_05476895_05478400.mRNA mRNA upstream 92633 5476396 ~ 5478565 (-) True CI01000306_05476895_05478400
CI01000306_05506906_05508492.mRNA mRNA upstream 122901 5506664 ~ 5508657 (-) False CI01000306_05506906_05508492
CI01000306_05520026_05523437.mRNA mRNA upstream 136229 5519992 ~ 5523437 (-) True CI01000306_05520026_05523437
TU497393 other downstream 816551 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2357752 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 3612693 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 3613421 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 4049209 1311702 ~ 1312434 (-) False G431814
TU497952 other upstream 657251 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 812344 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 971417 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 1053643 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 1482893 6866656 ~ 6866936 (-) True G434338

Expression Profile