RNA id: TU497833


Basic Information

Item Value
RNA id TU497833
length 240
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G433583
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5673412 ~ 5673651 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGGTCTTCGTTCATCATGTCTGGTCTTTTGGGTCTTTAACTGTAAAATTCCCGTAGAGTGTAATCTGGATAAATGTCATGTGCAACATCCTGGCAACCATCCAGAACACTCTAGCATCATAACAGCTGGTGTTCTACAGAACTTGCTGTTTCATTAATATAAAACCTTTCTAAACTATACATATGCTAATTTAAGCAGAAAATATGTTACACAACGAGTGAGACTCATTTAATGGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497808 lncRNA downstream 82849 5567915 ~ 5590563 (-) True G433561
TU497754 lncRNA downstream 109743 5563418 ~ 5563669 (-) True G433518
TU497790 lncRNA downstream 147060 5525168 ~ 5526352 (-) True G433550
TU497763 lncRNA downstream 155033 5517830 ~ 5518379 (-) True G433527
TU497783 lncRNA downstream 165063 5506132 ~ 5508349 (-) True CI01000306_05506906_05508492
TU497862 lncRNA upstream 84547 5758198 ~ 5815869 (-) True G433595
TU497884 lncRNA upstream 114082 5787733 ~ 5788071 (-) True G433617
TU497859 lncRNA upstream 115164 5788815 ~ 5792231 (-) True G433593
TU497938 lncRNA upstream 176107 5849758 ~ 5852399 (-) True G433656
TU497907 lncRNA upstream 211552 5885203 ~ 5887132 (-) True G433628
CI01000306_05664945_05673274.mRNA mRNA downstream 114 5664945 ~ 5673298 (-) True CI01000306_05664945_05673274
CI01000306_05631903_05640235.mRNA mRNA downstream 33177 5631733 ~ 5640235 (-) True CI01000306_05631903_05640235
CI01000306_05619706_05631189.mRNA mRNA downstream 42223 5619636 ~ 5631189 (-) True CI01000306_05619706_05631189
CI01000306_05606914_05611346.mRNA mRNA downstream 62066 5606605 ~ 5611346 (-) True CI01000306_05606914_05611346
CI01000306_05555926_05562924.mRNA mRNA downstream 110463 5555926 ~ 5562949 (-) True CI01000306_05555926_05562924
CI01000306_05732360_05733779.mRNA mRNA upstream 57632 5731283 ~ 5735848 (-) True CI01000306_05732360_05733779
CI01000306_05760131_05782175.mRNA mRNA upstream 85683 5759334 ~ 5782175 (-) True CI01000306_05760131_05782175
CI01000306_05879886_05883498.mRNA mRNA upstream 205087 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_05888356_05890267.mRNA mRNA upstream 214418 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05891607_05897232.mRNA mRNA upstream 217922 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
TU497685 other downstream 289649 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1128320 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2669521 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 3924462 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 3925190 1747526 ~ 1748222 (-) False G431728
TU497952 other upstream 367363 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 522456 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 681529 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 763755 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 1193005 6866656 ~ 6866936 (-) True G434338

Expression Profile