RNA id: TU497907


Basic Information

Item Value
RNA id TU497907
length 1930
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G433628
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5885203 ~ 5887132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTACGGGTCTGGAACGACATGAGGATGAGTAATTAATGACATAATTTTCATTTTGGGGTGAACTAACCCTTTAATTAATTAAAAGGTGCAATAGGGAGGTTTTCTCATTTAAGTTTACATAGTACATACATAAAACTGCATAAATGTTCCCAAAATGGTCACTATAGTAAGTTAGTAAAGTAAAGTTTGATTTGGCTGAAAATTCCAGGCTTCCAGATTGGATCCTTGCATGTTCACAGAGAAAAGAACGTTTGGCAGATATGCTACTTACATGCTTAAACTACATATTTTCCAGATGTATGCCTTGTTAGGATAGTTTTACTGTCAGTGATTTTAATCAGTCAGTTCTGCTCTGATATGGTGATCAAAGGCAACTATAGCTATATATCAAACCATCAGATTCATCAGAGCAGAAGAGTGGAGCACAACTGATGAAAAAAAATAATACAATTGCAAGTTACATGCAAAGGAACATTGTTTTCGTTTTCAGCCACAGATATCAATAGAGAGCCATTGTGTACCTTTAATGCGATTTTTATGTACAGCAGAATCTGAGACTGAAACTAGTTAGTTCAAATAGTTGTAGCTACGAACATCCTTAAAAAGAAAACGTCATGACCGTATATCATGTTACATCTCAGTGATTAAAAGTATGATACGTATTTACCTTTGTCATGCATTGTACATTTCACACATTTCACACATTTCACACAGCTGATAAGCATCTGTTTCCTCTCGTGTGATGTTCTCAAGCTATCTGATCGATACTTGCACTTGAACCAGACACTACAGCAACATTTTACACTCAAAGCAGACAAATGAACTTTTACACTTTGTGATTTTACACTTTATATACTTTTATTATTATTATTTTTAATATTCTGTTTGTATGTCCCAAATCACTGAACTGTTGTGTTAGTGTTTAACAGTGTGGTGCTTTGTATTTTCACATGTGCAACAACAATGGTGCTATAATAGTGTTCACCAAGGATATCAGCCATTAAAAACCACACACATCAAGGATAATGGTTCTGTTGTCCCAGAAGATCATGTTACAATTTTAAAAACCTTTTAACAGGAAATTCACAGATTATTGTTGCACATATGGGGTGGTGTCTTGGCAAAAACTCAACTATAGATAGTTCAGCTCTGACAAGGAGATATGAATTATAGTACTCATCTCCTCTTAGTATACAATCATCATTTATAACTTTATCTGTTTATGGAGGCATACCGTTGTATTGTAAAATAATTAAATGCAGGGTTCCCACGGTCATGGAAAAAATGGAAATGTCAGGGAATATTAAAATAATTAGAAAGTTTATAAGAATTAATGCAAATTTCTGTAGTGAAGTCTTATCCCATAAAAAGTGTGCAAACCCTGTAAATTCCCAGAGATCTATGCATCCGATCTGCATAATTTGAAGTCAGTATGTTAAAAGAAATGTGAATTATGACTATTGCTAAAAAGTTGAATATTTATATCTGAAAGAAATCTGTTTGCTTTAAAATATGCAAGTATTAGAAACTCTTAAATTATACTGTATCAAATCTGCAAATAAGCAAGTTTGATGTAAACCGCCTTTTTAAAGGAGTAATTAGAATTATTAATAGGTTTAACCTGTTGCACAGGATATTCTTTGTGGTTTTTCTTTATATTTGGGAACTTTTCCAACTGCTATGCTGTAGACTACAATAAACACTCATCATGCCGCTCATAATACAAGACCTTGATCCTTTTTTTTTTTTTTTTTTGGCAGTTAGTTCAGCCTTAAACTGTTCTACAAGAACACTTGAATGACATTATATATTGTCTTCTGGCACAAAGTAGCCTGTTTTTCTGTAAACATGGTTTCAAAGCACAAACTTTGTTTTTTTTTTTTTATAGCATGAACTTGATAAAAGTTTTGTTTTCACACTTACGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497938 lncRNA downstream 32804 5849758 ~ 5852399 (-) True G433656
TU497862 lncRNA downstream 69334 5758198 ~ 5815869 (-) True G433595
TU497859 lncRNA downstream 92972 5788815 ~ 5792231 (-) True G433593
TU497884 lncRNA downstream 97132 5787733 ~ 5788071 (-) True G433617
TU497833 lncRNA downstream 211552 5673412 ~ 5673651 (-) True G433583
TU497912 lncRNA upstream 124527 6011659 ~ 6028057 (-) True G433633
TU498234 lncRNA upstream 164673 6051805 ~ 6054634 (-) True G433940
TU498233 lncRNA upstream 216707 6103839 ~ 6107564 (-) True G433939
TU498244 lncRNA upstream 251545 6138677 ~ 6139696 (-) True G433948
TU498302 lncRNA upstream 369873 6257005 ~ 6257347 (-) True G434001
CI01000306_05879886_05883498.mRNA mRNA downstream 971 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_05760131_05782175.mRNA mRNA downstream 103028 5759334 ~ 5782175 (-) True CI01000306_05760131_05782175
CI01000306_05732360_05733779.mRNA mRNA downstream 149355 5731283 ~ 5735848 (-) True CI01000306_05732360_05733779
CI01000306_05664945_05673274.mRNA mRNA downstream 211905 5664945 ~ 5673298 (-) True CI01000306_05664945_05673274
CI01000306_05631903_05640235.mRNA mRNA downstream 244968 5631733 ~ 5640235 (-) True CI01000306_05631903_05640235
CI01000306_05888356_05890267.mRNA mRNA upstream 937 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05891607_05897232.mRNA mRNA upstream 4441 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
CI01000306_05902120_05929983.mRNA mRNA upstream 14666 5901798 ~ 5929983 (-) True CI01000306_05902120_05929983
CI01000306_05990444_06033972.mRNA mRNA upstream 102121 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
CI01000306_06048083_06049632.mRNA mRNA upstream 160707 6047839 ~ 6049632 (-) True CI01000306_06048083_06049632
TU497685 other downstream 501440 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1340111 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2881312 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4136253 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 4136981 1747526 ~ 1748222 (-) False G431728
TU497952 other upstream 153882 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 308975 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 468048 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 550274 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 979524 6866656 ~ 6866936 (-) True G434338

Expression Profile