RNA id: TU497143


Basic Information

Item Value
RNA id TU497143
length 403
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G432961
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5891860 ~ 5892292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACAACAGAAAATATATATTTTTTAAAACAATGCATTACATATTTGTAATCTCATGGTGACAGTTGATACATGTTATTTTTAGAAATCTCACAATTACAAATGTTATATTCACAATATCATACTATTACACATATATACATTGATTAAACAGTTCCTCAAGAACTTAATTAGAGTTTAATTACGCAATGATGAAATTCAGTGAGCATCACTCAAAGGCCACAGTCAAGACATGCTGCAATTCCTAACACACACACACACACAAAACCCATTTGTGCTCTACCCACGCTATGATAAAGAGCAGCTGTTTGACAGTCAGACTTGTTTTGTTATGATTCACAGCTTGGATTTGGTCATGTTCATGATTTCTCTCAATGTGTCTGTGTTTTCTCCCTCGGGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497320 lncRNA upstream 676 5890961 ~ 5891184 (+) True G433120
TU497173 lncRNA upstream 4704 5885200 ~ 5887156 (+) True G432991
TU497164 lncRNA upstream 122794 5751669 ~ 5769066 (+) True G432982
TU497129 lncRNA upstream 218565 5664915 ~ 5673295 (+) True G432947
TU497253 lncRNA upstream 317787 5573601 ~ 5574073 (+) True G433070
TU497324 lncRNA downstream 14995 5907287 ~ 5908200 (+) False G433123
TU497323 lncRNA downstream 15145 5907437 ~ 5909232 (+) True G433123
TU497348 lncRNA downstream 29933 5922225 ~ 5928845 (+) False G433134
TU497347 lncRNA downstream 33370 5925662 ~ 5972106 (+) True G433134
TU497332 lncRNA downstream 104536 5996828 ~ 6005986 (+) True G433128
CI01000306_05870047_05877183.mRNA mRNA upstream 14666 5869338 ~ 5877194 (+) True CI01000306_05870047_05877183
CI01000306_05864099_05864974.mRNA mRNA upstream 26886 5864099 ~ 5864974 (+) True CI01000306_05864099_05864974
CI01000306_05857348_05858295.mRNA mRNA upstream 32446 5857348 ~ 5859414 (+) True CI01000306_05857348_05858295
CI01000306_05848803_05855772.mRNA mRNA upstream 35987 5848803 ~ 5855873 (+) True CI01000306_05848803_05855772
CI01000306_05835418_05846769.mRNA mRNA upstream 44901 5835418 ~ 5846959 (+) True CI01000306_05835418_05846769
CI01000306_05976516_05985251.mRNA mRNA downstream 83530 5975822 ~ 5986261 (+) False CI01000306_05976516_05985251
CI01000306_06051975_06053165.mRNA mRNA downstream 159146 6051438 ~ 6054765 (+) True CI01000306_06051975_06053165
CI01000306_06055478_06066083.mRNA mRNA downstream 163186 6055478 ~ 6066413 (+) True CI01000306_06055478_06066083
CI01000306_06074861_06096200.mRNA mRNA downstream 182569 6074861 ~ 6096287 (+) True CI01000306_06074861_06096200
CI01000306_06097961_06104051.mRNA mRNA downstream 205298 6097590 ~ 6104337 (+) True CI01000306_06097961_06104051
TU497140 other upstream 231691 5658928 ~ 5660169 (+) True G432958
TU496836 other upstream 1369324 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 1369324 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 1564038 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 2082862 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU497329 other downstream 88221 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 213851 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 216319 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1227025 7119317 ~ 7119859 (+) True G434545
TU499876 other downstream 3333273 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504

Expression Profile