Item | Value |
---|---|
RNA id | TU497912 |
length | 16176 |
lncRNA type | intronic |
GC content | 0.35 |
exon number | 2 |
gene id | G433633 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 6011659 ~ 6028057 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU497907 | lncRNA | downstream | 124527 | 5885203 ~ 5887132 (-) | True | G433628 |
TU497938 | lncRNA | downstream | 159260 | 5849758 ~ 5852399 (-) | True | G433656 |
TU497862 | lncRNA | downstream | 195790 | 5758198 ~ 5815869 (-) | True | G433595 |
TU497859 | lncRNA | downstream | 219428 | 5788815 ~ 5792231 (-) | True | G433593 |
TU497884 | lncRNA | downstream | 223588 | 5787733 ~ 5788071 (-) | True | G433617 |
TU498234 | lncRNA | upstream | 23748 | 6051805 ~ 6054634 (-) | True | G433940 |
TU498233 | lncRNA | upstream | 75782 | 6103839 ~ 6107564 (-) | True | G433939 |
TU498244 | lncRNA | upstream | 110620 | 6138677 ~ 6139696 (-) | True | G433948 |
TU498302 | lncRNA | upstream | 228948 | 6257005 ~ 6257347 (-) | True | G434001 |
TU498340 | lncRNA | upstream | 310922 | 6342118 ~ 6344738 (-) | True | G434035 |
CI01000306_05902120_05929983.mRNA | mRNA | downstream | 81676 | 5901798 ~ 5929983 (-) | True | CI01000306_05902120_05929983 |
CI01000306_05891607_05897232.mRNA | mRNA | downstream | 114334 | 5891573 ~ 5897325 (-) | True | CI01000306_05891607_05897232 |
CI01000306_05888356_05890267.mRNA | mRNA | downstream | 121293 | 5888069 ~ 5890366 (-) | True | CI01000306_05888356_05890267 |
CI01000306_05879886_05883498.mRNA | mRNA | downstream | 127427 | 5878738 ~ 5884232 (-) | True | CI01000306_05879886_05883498 |
CI01000306_05760131_05782175.mRNA | mRNA | downstream | 229484 | 5759334 ~ 5782175 (-) | True | CI01000306_05760131_05782175 |
CI01000306_06048083_06049632.mRNA | mRNA | upstream | 19782 | 6047839 ~ 6049632 (-) | True | CI01000306_06048083_06049632 |
CI01000306_06108667_06110250.mRNA | mRNA | upstream | 80201 | 6108258 ~ 6110250 (-) | True | CI01000306_06108667_06110250 |
CI01000306_06244021_06244397.mRNA | mRNA | upstream | 215878 | 6243935 ~ 6244397 (-) | True | CI01000306_06244021_06244397 |
CI01000306_06253870_06254391.mRNA | mRNA | upstream | 225289 | 6253346 ~ 6256066 (-) | True | CI01000306_06253870_06254391 |
CI01000306_06273326_06277287.mRNA | mRNA | upstream | 244358 | 6272415 ~ 6277442 (-) | True | CI01000306_06273326_06277287 |
TU497685 | other | downstream | 627896 | 5361643 ~ 5383763 (-) | True | G433450 |
TU497393 | other | downstream | 1466567 | 4542723 ~ 4545092 (-) | True | CI01000306_04544349_04545034 |
TU496065 | other | downstream | 3007768 | 3000236 ~ 3003891 (-) | True | G432022 |
TU495727 | other | downstream | 4262709 | 1748822 ~ 1748950 (-) | True | G431728 |
TU495726 | other | downstream | 4263437 | 1747526 ~ 1748222 (-) | False | G431728 |
TU497952 | other | upstream | 12957 | 6041014 ~ 6041283 (-) | True | G433670 |
TU498286 | other | upstream | 168050 | 6196107 ~ 6197210 (-) | True | G433985 |
TU498319 | other | upstream | 327123 | 6355180 ~ 6361643 (-) | True | G434016 |
TU498395 | other | upstream | 409349 | 6437406 ~ 6452251 (-) | True | G434086 |
TU498677 | other | upstream | 838599 | 6866656 ~ 6866936 (-) | True | G434338 |