RNA id: TU497952


Basic Information

Item Value
RNA id TU497952
length 270
RNA type TUCP
GC content 0.57
exon number 1
gene id G433670
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6041014 ~ 6041283 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGTGCTGACCATTATGGCCACAGCCGTGTTGTGTGTGTGGGCTACACATACATGGGCTCCAGCCCCTGACTATCATCCCAGAGAGGGCTCCAGTCCCCGTCTCAAGTCCAGAGAGGGCTCTAGTCCCCATCCTGAGTCCAAAGAGGACTCCAGTCCCCATCCAGAGTCCAGAGATGACTCCAGCCCAAAAGCCCGTTCCAGAGTCTGCTCCAGCCCAAGAGCCCGCTCCAGTCCACAACCCGATAGATCCTCCCAAGAAAACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497912 lncRNA downstream 12957 6011659 ~ 6028057 (-) True G433633
TU497907 lncRNA downstream 153882 5885203 ~ 5887132 (-) True G433628
TU497938 lncRNA downstream 188615 5849758 ~ 5852399 (-) True G433656
TU497862 lncRNA downstream 225145 5758198 ~ 5815869 (-) True G433595
TU497859 lncRNA downstream 248783 5788815 ~ 5792231 (-) True G433593
TU498234 lncRNA upstream 10522 6051805 ~ 6054634 (-) True G433940
TU498233 lncRNA upstream 62556 6103839 ~ 6107564 (-) True G433939
TU498244 lncRNA upstream 97394 6138677 ~ 6139696 (-) True G433948
TU498302 lncRNA upstream 215722 6257005 ~ 6257347 (-) True G434001
TU498340 lncRNA upstream 297696 6342118 ~ 6344738 (-) True G434035
CI01000306_05990444_06033972.mRNA mRNA downstream 7042 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
CI01000306_05902120_05929983.mRNA mRNA downstream 111031 5901798 ~ 5929983 (-) True CI01000306_05902120_05929983
CI01000306_05891607_05897232.mRNA mRNA downstream 143689 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
CI01000306_05888356_05890267.mRNA mRNA downstream 150648 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05879886_05883498.mRNA mRNA downstream 156782 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_06048083_06049632.mRNA mRNA upstream 6556 6047839 ~ 6049632 (-) True CI01000306_06048083_06049632
CI01000306_06108667_06110250.mRNA mRNA upstream 66975 6108258 ~ 6110250 (-) True CI01000306_06108667_06110250
CI01000306_06244021_06244397.mRNA mRNA upstream 202652 6243935 ~ 6244397 (-) True CI01000306_06244021_06244397
CI01000306_06253870_06254391.mRNA mRNA upstream 212063 6253346 ~ 6256066 (-) True CI01000306_06253870_06254391
CI01000306_06273326_06277287.mRNA mRNA upstream 231132 6272415 ~ 6277442 (-) True CI01000306_06273326_06277287
TU497685 other downstream 657251 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1495922 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 3037123 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4292064 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 4292792 1747526 ~ 1748222 (-) False G431728
TU498286 other upstream 154824 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 313897 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 396123 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 825373 6866656 ~ 6866936 (-) True G434338
TU500988 other upstream 3614996 9656279 ~ 9671776 (-) True G436446

Expression Profile