Item | Value |
---|---|
RNA id | TU498233 |
length | 487 |
lncRNA type | read_through |
GC content | 0.48 |
exon number | 2 |
gene id | G433939 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 6103839 ~ 6107564 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU498234 | lncRNA | downstream | 49205 | 6051805 ~ 6054634 (-) | True | G433940 |
TU497912 | lncRNA | downstream | 75782 | 6011659 ~ 6028057 (-) | True | G433633 |
TU497907 | lncRNA | downstream | 216707 | 5885203 ~ 5887132 (-) | True | G433628 |
TU497938 | lncRNA | downstream | 251440 | 5849758 ~ 5852399 (-) | True | G433656 |
TU497859 | lncRNA | downstream | 311608 | 5788815 ~ 5792231 (-) | True | G433593 |
TU498244 | lncRNA | upstream | 31113 | 6138677 ~ 6139696 (-) | True | G433948 |
TU498302 | lncRNA | upstream | 149441 | 6257005 ~ 6257347 (-) | True | G434001 |
TU498340 | lncRNA | upstream | 231415 | 6342118 ~ 6344738 (-) | True | G434035 |
TU498370 | lncRNA | upstream | 298961 | 6406525 ~ 6406767 (-) | True | G434064 |
TU498379 | lncRNA | upstream | 306189 | 6413753 ~ 6414174 (-) | True | G434073 |
CI01000306_06048083_06049632.mRNA | mRNA | downstream | 54207 | 6047839 ~ 6049632 (-) | True | CI01000306_06048083_06049632 |
CI01000306_05990444_06033972.mRNA | mRNA | downstream | 69867 | 5989253 ~ 6033972 (-) | True | CI01000306_05990444_06033972 |
CI01000306_05902120_05929983.mRNA | mRNA | downstream | 173856 | 5901798 ~ 5929983 (-) | True | CI01000306_05902120_05929983 |
CI01000306_05891607_05897232.mRNA | mRNA | downstream | 206514 | 5891573 ~ 5897325 (-) | True | CI01000306_05891607_05897232 |
CI01000306_05888356_05890267.mRNA | mRNA | downstream | 213473 | 5888069 ~ 5890366 (-) | True | CI01000306_05888356_05890267 |
CI01000306_06108667_06110250.mRNA | mRNA | upstream | 694 | 6108258 ~ 6110250 (-) | True | CI01000306_06108667_06110250 |
CI01000306_06244021_06244397.mRNA | mRNA | upstream | 136371 | 6243935 ~ 6244397 (-) | True | CI01000306_06244021_06244397 |
CI01000306_06253870_06254391.mRNA | mRNA | upstream | 145782 | 6253346 ~ 6256066 (-) | True | CI01000306_06253870_06254391 |
CI01000306_06273326_06277287.mRNA | mRNA | upstream | 164851 | 6272415 ~ 6277442 (-) | True | CI01000306_06273326_06277287 |
CI01000306_06289571_06299875.mRNA | mRNA | upstream | 181584 | 6289148 ~ 6300251 (-) | True | CI01000306_06289571_06299875 |
TU497952 | other | downstream | 62556 | 6041014 ~ 6041283 (-) | True | G433670 |
TU497685 | other | downstream | 720076 | 5361643 ~ 5383763 (-) | True | G433450 |
TU497393 | other | downstream | 1558747 | 4542723 ~ 4545092 (-) | True | CI01000306_04544349_04545034 |
TU496065 | other | downstream | 3099948 | 3000236 ~ 3003891 (-) | True | G432022 |
TU495727 | other | downstream | 4354889 | 1748822 ~ 1748950 (-) | True | G431728 |
TU498286 | other | upstream | 88543 | 6196107 ~ 6197210 (-) | True | G433985 |
TU498319 | other | upstream | 247616 | 6355180 ~ 6361643 (-) | True | G434016 |
TU498395 | other | upstream | 329842 | 6437406 ~ 6452251 (-) | True | G434086 |
TU498677 | other | upstream | 759092 | 6866656 ~ 6866936 (-) | True | G434338 |
TU500988 | other | upstream | 3548715 | 9656279 ~ 9671776 (-) | True | G436446 |