RNA id: TU497991



Basic Information


Item Value
RNA id TU497991
length 1316
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G433705
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6267641 ~ 6268956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGTCATATAAAAATCACAAAGTGTCAAATTCTTAGATCATGATAGCTGTTCGCAAATCCCCACATTGGCCATTTGTTAATAAAGTGTCACATTAAGTATTGATTGTTTTGATCATCACATTGGTAAAAATCAACTGAAACAATTCATTTTAGTTCGGAATAAATGCTATAACATTTCCTTATATTTGGCAGTTCAGAAACATTTAAAACCGCTGTGTACATTTTCTTCTGTTCAGGGGCTATTTAAAAAAAAAAAAAAAAAAGAATTAGAATTCATGAAGTCAAATTACAAGTTTTTTCTAAATCCTTTGCTGACCCTTATTGGCCAGGAGAAGTAACTGCATTGCAGTTCCCTTTTCTACCTACAGCATTTATGAAGTATGACACCAGGTGGCGCTCGTCCACGTGCCACTCTACATCATTCAAAGATCATCTTTACCAGCCATCTAATTCAGTAACAAAAATGATTCCTTAAAGACAGAAAAAAAGTAATATATATATAGCTTGCAGTGCATGAAGACCCAACTCCTTACATCTACGCTCCTTCAAAAACTCATCCATCCCATAAAAATGACATTTCAATACAGTAAATAACCTTTCAGCTGCCCTCATCCTTTCCCAGCACTTCAGTCATATTCAAAGCAAAAATATGGAGCTTCTCTTGATCCTAGCTATTGTACATTTCACAATGTTTCCTTACAAAATACTTGGCAACTCTACGGTCTATGTTAAAAATTAGTAGCATCTCAATGGCCAAGCACTATTCTAAAGCAGAACAAAACCATAGATAAGAAAAACAAAAGATAAATAGTTCGCCTTGCATTTTATTCCCCTTTATTTTTGTGGTTTTTATTTGTGAAAGTCTCAATTTGAAGCTTGACCTCAGTTCTTGTTGACTTGCATGATTCTTACTCAGAATACATGTAGCTTTAATTGATGAATTAAAAGACAAAAGACCATGAACACAGGGTGCGGGTCAGGGTTTGAACTTCTACACGGGGTAATTCCACTCCAGTTCATCGGGTTCAGAGATCAGCGCACATTGTGTACCCAATCTCACCAATGCACCACTGAGCAGAACATATTAAGAAGTGATTCATGAGTTCAGCCCCCATGGACATGCATGCGGGCTGCTTCCTAAAAAAACTCCTGGTCCCTCCCTGTGTGTCTAACATGATACCAAAAAAAATAAAAAATGTTATCAAGCTGTACATCAGAGGATTTAGCTCCTTATATGTACATTCCAAAAGGGATGAAGAAATGTCGACAGCTGTTATCTTTTTCTCTCTCCTATTTCAAATGATGCAATGAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU497966 lncRNA upstream 13147 6253305 ~ 6254494 (+) True G433683
TU497988 lncRNA upstream 60136 6201943 ~ 6207505 (+) True G433702
TU497986 lncRNA upstream 99326 6128651 ~ 6168315 (+) True G433700
TU497332 lncRNA upstream 261655 5996828 ~ 6005986 (+) True G433128
TU497347 lncRNA upstream 295535 5925662 ~ 5972106 (+) True G433134
TU497995 lncRNA downstream 402 6269358 ~ 6270538 (+) True G433709
TU498001 lncRNA downstream 6415 6275371 ~ 6277148 (+) True G433715
TU498039 lncRNA downstream 142200 6411156 ~ 6411558 (+) True G433753
TU498048 lncRNA downstream 157264 6426220 ~ 6426444 (+) True CI01000306_06426490_06435408
TU498051 lncRNA downstream 160988 6429944 ~ 6430144 (+) True G433765
CI01000306_06258779_06262616.mRNA mRNA upstream 3338 6257089 ~ 6264303 (+) True CI01000306_06258779_06262616
CI01000306_06139324_06242205.mRNA mRNA upstream 25436 6139324 ~ 6242205 (+) True CI01000306_06139324_06242205
CI01000306_06106248_06107449.mRNA mRNA upstream 160103 6106248 ~ 6107538 (+) False CI01000306_06106248_06107449
CI01000306_06097961_06104051.mRNA mRNA upstream 163304 6097590 ~ 6104337 (+) True CI01000306_06097961_06104051
CI01000306_06074861_06096200.mRNA mRNA upstream 171354 6074861 ~ 6096287 (+) True CI01000306_06074861_06096200
CI01000306_06281314_06288766.mRNA mRNA downstream 12058 6281014 ~ 6289053 (+) True CI01000306_06281314_06288766
CI01000306_06303064_06327102.mRNA mRNA downstream 33601 6302557 ~ 6327477 (+) True CI01000306_06303064_06327102
CI01000306_06355528_06390936.mRNA mRNA downstream 85752 6354708 ~ 6391189 (+) True CI01000306_06355528_06390936
CI01000306_06426490_06435408.mRNA mRNA downstream 154819 6423775 ~ 6435558 (+) False CI01000306_06426490_06435408
CI01000306_06437636_06441233.mRNA mRNA downstream 167670 6436626 ~ 6441267 (+) True CI01000306_06437636_06441233
TU498010 other upstream 137863 6108611 ~ 6129778 (+) True G433724
TU497968 other upstream 159466 6106983 ~ 6107080 (+) True G433684
TU497329 other upstream 281353 5980513 ~ 5980671 (+) True G433126
TU497140 other upstream 607472 5658928 ~ 5660169 (+) True G432958
TU496834 other upstream 1745105 4522210 ~ 4522536 (+) True G432678
TU498892 other downstream 850361 7119317 ~ 7119859 (+) True G434545
TU499876 other downstream 2956609 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU499848 other downstream 3004943 9273899 ~ 9277829 (+) False G435449
TU499849 other downstream 3004943 9273899 ~ 9281923 (+) False G435449
TU500012 other downstream 3443893 9712849 ~ 9737144 (+) True G435590

Expression Profile