RNA id: TU498319


Basic Information

Item Value
RNA id TU498319
length 2507
RNA type TUCP
GC content 0.49
exon number 3
gene id G434016
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6355180 ~ 6361643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGCACTGACCGAGAACAAATATGGTATTAACAAAACCCATTTCAGAAATTAAGCTGAAGCTGCCAAGTAGCTTTCTAGCTGTCAAAGATTCACAGCAGTGAACGTGGATCAAACATTCAAACATTTTGAAGATATCATGGTGAGAGGAGTACTTACTTTTGTTGTCCAGCTGTGCCCTGTACTTGCTGAACCCCTTCAGTCGGACTCTCTGACCCAGTAGATCCAGAAACTCATCCAGTGCGGGACTACCACTCTCGTTATTGTACATCTCCTCCTCTGTGCTCTGCCCGGCCTGGCAGTACAGGATGCCCACTTTGTGCTGGTAACTCAGCCCTTGCTGATCCAGCTTCAGCAGTTGTTCTGGGACTTTAGGTGAGCTGATGGCCATTCTGAGGCACTGAATGTTGACCTCTGGAACTACGTACTCCAGCACCTCTTTAAGAGGGAGACCACGGGACATCCCATGCTTTGCGGTGGAGGGGACGGCATCCTCCATGATTGAGCCTCTCAAAGTGGTGAGCTCACTGGTCCTGAAGATGACCCTATAATTATACTGTGGGCCCTCCTTCCCCTCCTCCAGCTTTTCTCTCCGAATGCTAACTGCCACTGGGCCCAAGTTCTCATCAACACCAAAGTAGTTCTGGTGCTCTATCAAGAAAAGAGAGGGGTCGACATTATACAGTGAGAGATTCACTCAGTTATTTTGGTTACTAAGTGAGATCATCAATCTCTATAGAGCACTATGTGTTGACCCACGAAATCAAGGTCTAGTTTGTAAAACATACCTTTGTTGAAGAAGAATTTGTGATAGTAGTAAGCACCCATGTCAATGTGCTCAATGATGTAGCGTTTAATGCAATCCCGTGGAACAGCATAATTTTCACGAGAGGCATAATTCTCACGGGACATTTCCAAGACAGAAACCCCCGCATTGGTGCAGTGTGAGCTTAAAGTAGACTCAATAGTATAATTGTCACCCACATTGTTGTGGGGTCCACTGTTTGGTTTGGTGGCACTCAGTTTCCTTTCACCTTCACCACCAATCTCGTTACGGAAATACGGGCAGGTCAGCACCAAACCATTGCTCTTCCCATCCCCTTCGTCAGGATCGGTGCAAGATTTTGGCACAAGTTCCTCACAATTGTCCAAAGGGGACTCACAAAGAGGCAAGGGGTCAAGACTGTCCACTCCCCCACCAATTTGGTGTTGGGATGCTGCAGAAGCCCCCGTGGTAATATTTTTCCGACGTGCTAAATTTGAACGATTAGTAACAGCCTCGCTAATATTGAAAAGCACGCTCTGGACGTCATAGTGGGCGAAGCATCTCTGGAAACTCAATGGACGACCGTGTCTACTACAATCGTCGTGTTCGCTAAGTTGCCGCTGCTCACTTTTCATAGTCTTCAGCCTGCGGAATATGGACGTCTCACCCTTTTCGGATTTCTGCCGCTGTAGGAAGGACTTCTCCCTTTCCCGATTGTAGAAGAGCGAACTGTCCACATAGTCAGAGTAGTTGGGAATGCAGAGAATGTCCCCCCGTGCAATCTGCGCAGCAGTCTGGAGACTTGGAGAAATGGCGGTCTCTGGAAACCGACGGAACTCCGGAAAGCCATGCGGAGGTGGTGCGCTTGGTTGCTCCGAGAGTTCTGGCTGGAAACCCTTCAGATTGCCAAAAAACCCCTCATCGGGCAAACCCTGGCGATTGATGGAGGACGTGCTTCCATACTCTCGGTGCAAAGTGGCACCTGTATTGGGGTTGATTGCTGTCTGATCCATGTCCTCCGCCCCTATATCACTGATGGTGACGTCACTGTTGCTTCTCTTCTGGAGAGCGTGGTGAACTTTACCAGGAGAGTGGCTCAGAAGGTCACTAAGACCATATTTTGTCTCCAGAAAGCTGGGATTGGGAGGAGAACCTGGGCTTTGTTTGACCACATCTTCCGCCAATTGACTGGGTTGTCCATTCTGGAAGGACGTCATTAGGCTGTCGTACCTGGGTGGTGGACCGTGGCCATCCTTCTTCGGTGGCCAATCTGACACTCTTGCACGTATCCCCATCTTGGGCACTGCTGGTGTTCCTTGTGTATTTGCGCCAGGAGGTCCCATATTCCCATTCAAGGCTTGAAGCTTTTTGGCAAATAGATCATCAGTCTGCATCTCTGAGGTGAGGCGCTTCTCAAGCTTCTACGGCCTCGTCTGCTGTATCTCTGGTCCTAAAGTTAGGGATATTCATACCTGACGTTAAATTGTCCAGAACAGAAATTCCAACTCCAGCATTTTACGCAATAGCGAAGGAGCTTGGCGGCACTGGGAGAAGTCTGTGAATGATGACTGACCCACGTCAGGGTGTTCAGACCTATGGGTCTGTAATCCATAGGAGGAGAATGAGACTCTTTATCTCAGTTTCACTGTCAAGGACAACTGCTCACTCCACGGGAGGGCAAGCAGGAGATACGGTCATTTCACAGCCATGTAAGCTTAACAAAGCCAGGTGGGATCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498340 lncRNA downstream 10442 6342118 ~ 6344738 (-) True G434035
TU498302 lncRNA downstream 97833 6257005 ~ 6257347 (-) True G434001
TU498244 lncRNA downstream 215484 6138677 ~ 6139696 (-) True G433948
TU498233 lncRNA downstream 247616 6103839 ~ 6107564 (-) True G433939
TU498234 lncRNA downstream 300546 6051805 ~ 6054634 (-) True G433940
TU498370 lncRNA upstream 44882 6406525 ~ 6406767 (-) True G434064
TU498379 lncRNA upstream 52110 6413753 ~ 6414174 (-) True G434073
TU498385 lncRNA upstream 64067 6425710 ~ 6425956 (-) True G434079
TU498394 lncRNA upstream 75763 6437406 ~ 6441453 (-) False G434086
TU498410 lncRNA upstream 104813 6466456 ~ 6466941 (-) True G434097
CI01000306_06336883_06339725.mRNA mRNA downstream 15202 6336651 ~ 6339978 (-) False CI01000306_06336883_06339725
CI01000306_06289571_06299875.mRNA mRNA downstream 54929 6289148 ~ 6300251 (-) True CI01000306_06289571_06299875
CI01000306_06273326_06277287.mRNA mRNA downstream 77738 6272415 ~ 6277442 (-) True CI01000306_06273326_06277287
CI01000306_06253870_06254391.mRNA mRNA downstream 99114 6253346 ~ 6256066 (-) True CI01000306_06253870_06254391
CI01000306_06244021_06244397.mRNA mRNA downstream 110783 6243935 ~ 6244397 (-) True CI01000306_06244021_06244397
CI01000306_06414819_06416263.mRNA mRNA upstream 52898 6414541 ~ 6416682 (-) True CI01000306_06414819_06416263
CI01000306_06741870_06743844.mRNA mRNA upstream 380216 6741859 ~ 6743942 (-) True CI01000306_06741870_06743844
CI01000306_06776313_06778496.mRNA mRNA upstream 414471 6776114 ~ 6778696 (-) False CI01000306_06776313_06778496
CI01000306_06780961_06789374.mRNA mRNA upstream 419130 6780773 ~ 6789594 (-) True CI01000306_06780961_06789374
CI01000306_06815523_06829337.mRNA mRNA upstream 453798 6815441 ~ 6829516 (-) True CI01000306_06815523_06829337
TU498286 other downstream 157970 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 313897 6041014 ~ 6041283 (-) True G433670
TU497685 other downstream 971417 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1810088 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 3351289 3000236 ~ 3003891 (-) True G432022
TU498395 other upstream 75763 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 505013 6866656 ~ 6866936 (-) True G434338
TU500988 other upstream 3294636 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 3473382 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 3660505 10022148 ~ 10025375 (-) True G436643

Expression Profile