RNA id: TU498677


Basic Information

Item Value
RNA id TU498677
length 281
RNA type TUCP
GC content 0.49
exon number 1
gene id G434338
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6866656 ~ 6866936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGCACCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATAGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCCCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTAGGTGCCAGATACCACAGCACACCTTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498664 lncRNA downstream 16518 6849478 ~ 6850138 (-) True G434325
TU498601 lncRNA downstream 83705 6782669 ~ 6782951 (-) True G434273
TU498431 lncRNA downstream 87841 6776642 ~ 6778815 (-) True CI01000306_06776313_06778496
TU498411 lncRNA downstream 392123 6467705 ~ 6474533 (-) True G434098
TU498410 lncRNA downstream 399715 6466456 ~ 6466941 (-) True G434097
TU498682 lncRNA upstream 2873 6869809 ~ 6870026 (-) True G434343
TU498831 lncRNA upstream 98826 6965762 ~ 6965987 (-) True G434485
TU498833 lncRNA upstream 101509 6968445 ~ 6968662 (-) True G434487
TU498852 lncRNA upstream 213188 7080124 ~ 7080333 (-) True G434506
TU498863 lncRNA upstream 226147 7093083 ~ 7093304 (-) True G434517
CI01000306_06815523_06829337.mRNA mRNA downstream 37140 6815441 ~ 6829516 (-) True CI01000306_06815523_06829337
CI01000306_06780961_06789374.mRNA mRNA downstream 77062 6780773 ~ 6789594 (-) True CI01000306_06780961_06789374
CI01000306_06776313_06778496.mRNA mRNA downstream 87960 6776114 ~ 6778696 (-) False CI01000306_06776313_06778496
CI01000306_06741870_06743844.mRNA mRNA downstream 122714 6741859 ~ 6743942 (-) True CI01000306_06741870_06743844
CI01000306_06414819_06416263.mRNA mRNA downstream 449974 6414541 ~ 6416682 (-) True CI01000306_06414819_06416263
CI01000306_06998286_07073243.mRNA mRNA upstream 131350 6998286 ~ 7073243 (-) True CI01000306_06998286_07073243
CI01000306_07331303_07340271.mRNA mRNA upstream 464016 7330952 ~ 7341271 (-) True CI01000306_07331303_07340271
CI01000306_07561305_07566290.mRNA mRNA upstream 693615 7560551 ~ 7566933 (-) True CI01000306_07561305_07566290
CI01000306_07680537_07684881.mRNA mRNA upstream 812932 7679868 ~ 7685987 (-) True CI01000306_07680537_07684881
CI01000306_07687805_07693178.mRNA mRNA upstream 820670 7687606 ~ 7693178 (-) True CI01000306_07687805_07693178
TU498395 other downstream 414405 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 505013 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 669446 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 825373 6041014 ~ 6041283 (-) True G433670
TU497685 other downstream 1482893 5361643 ~ 5383763 (-) True G433450
TU500988 other upstream 2789343 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 2968089 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 3155212 10022148 ~ 10025375 (-) True G436643

Expression Profile