RNA id: TU498831


Basic Information

Item Value
RNA id TU498831
length 226
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G434485
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6965762 ~ 6965987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTAATCATACTCATGATATATTCATATTCATAGTTTCCACAAAAATATTAAGCAGCACAACAGTTTTTAAATAATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGGCTGGAGTAATGATGCTGAAAATTCTCCTTTGCCATCACAGGAATAAATTGCATTCAAAAATATATTAAAATAGAAAACAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498682 lncRNA downstream 95736 6869809 ~ 6870026 (-) True G434343
TU498664 lncRNA downstream 115624 6849478 ~ 6850138 (-) True G434325
TU498601 lncRNA downstream 182811 6782669 ~ 6782951 (-) True G434273
TU498431 lncRNA downstream 186947 6776642 ~ 6778815 (-) True CI01000306_06776313_06778496
TU498411 lncRNA downstream 491229 6467705 ~ 6474533 (-) True G434098
TU498833 lncRNA upstream 2458 6968445 ~ 6968662 (-) True G434487
TU498852 lncRNA upstream 114137 7080124 ~ 7080333 (-) True G434506
TU498863 lncRNA upstream 127096 7093083 ~ 7093304 (-) True G434517
TU498865 lncRNA upstream 127681 7093668 ~ 7093948 (-) True G434519
TU498880 lncRNA upstream 142489 7108476 ~ 7108677 (-) True G434533
CI01000306_06815523_06829337.mRNA mRNA downstream 136246 6815441 ~ 6829516 (-) True CI01000306_06815523_06829337
CI01000306_06780961_06789374.mRNA mRNA downstream 176168 6780773 ~ 6789594 (-) True CI01000306_06780961_06789374
CI01000306_06776313_06778496.mRNA mRNA downstream 187066 6776114 ~ 6778696 (-) False CI01000306_06776313_06778496
CI01000306_06741870_06743844.mRNA mRNA downstream 221820 6741859 ~ 6743942 (-) True CI01000306_06741870_06743844
CI01000306_06414819_06416263.mRNA mRNA downstream 549080 6414541 ~ 6416682 (-) True CI01000306_06414819_06416263
CI01000306_06998286_07073243.mRNA mRNA upstream 32299 6998286 ~ 7073243 (-) True CI01000306_06998286_07073243
CI01000306_07331303_07340271.mRNA mRNA upstream 364965 7330952 ~ 7341271 (-) True CI01000306_07331303_07340271
CI01000306_07561305_07566290.mRNA mRNA upstream 594564 7560551 ~ 7566933 (-) True CI01000306_07561305_07566290
CI01000306_07680537_07684881.mRNA mRNA upstream 713881 7679868 ~ 7685987 (-) True CI01000306_07680537_07684881
CI01000306_07687805_07693178.mRNA mRNA upstream 721619 7687606 ~ 7693178 (-) True CI01000306_07687805_07693178
TU498677 other downstream 98826 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 513511 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 604119 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 768552 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 924479 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 2690292 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 2869038 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 3056161 10022148 ~ 10025375 (-) True G436643

Expression Profile